Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g02175 ATGGATATTTCGGAGGTTGAAGAAAATCTTTTTGCTGCTAGTGATGCCAAGCTACATCGAGGAATGTGCAAGACCCTTTCTGCAATATACTGTAAAGTATTATCAATATTCCCTTCATTGGAAGCTGCACGACCTCGGAGCAAGTCTGGTATCCAGGCGTTATGTTCTTTGCATGTAGCACTTGAAAAAGCCAAGAATACTCTCCAACATTGTACAGAGAGCAGCAAACTTTACTTGGCTATAACCGGGGACTCTGTCCTGTTAAAGTTTGAGAAGGTAAAAAGTGCTCTACAAAATAGCCTTAAACGTGTTGAAGATATTGTTCCACAGTCAATTGGCTATCAGGTTCAGGAGATTATGAAGGAACTGGGGAGCACTCAATTTTTCCTCGATCCTTTAGAGAAGCAAGTTGGTGATGACATTATTTTATTGCTCCAACAGGGACGAACATTTAACAACACCGTTGACAACAATGAGCTTGAGGCTTTTCACCAAGCTGCTACTAGACTTGGAATAAACTCCTCAAGAGCAGCTCTTGCAGAAAGAAGAGCGCTAAAGAAACTAATTGACCGGTCTCGCACTGAAGATGACAAGAGGAAGGAATCAATCGTAGCTTATCTTTTGCATCTCATGAGGAAGTATTCCAAGTTATTTAGAACCGAAGTATCGGATGACAATGATTCACAGGGTTCTGGACCTTGTTCACCCACTGTTCAGGGCTCTCTTGATGACAGTGGACCTGGTGGAAATGGTCAAGCCTTCGAAAGGCAGCTAACAAAGATTGGTTCTTTTACTTTGAAGCCAAAAATTCGCAAATTGGAGCAGATTCCCCTTCCACCTGATGAGTTGAGGTGTCCTATATCATTGCAACTTATGTATGATCCGGTCATAATTGCTTCTGGGCAAACATATGAAAGGACTTGCATTGAGAAGTGGTTAAGTGACGGCCATAACACCTGCCCGAAAACTCAACAGAAACTCTCTCATCTTTCATTGACACCGAATTTCTGTGTCAAGGGCTTGATTGCAAACTGGTGTGAACAGCATGGAGTTCCTGTTCCTGATGGACCTCCAGATAGTCTTGACCTCAATTACTGGAGGCTCGCATTATCTGAAGAGTCTCTAAATTTGTCACCTGTGAACTCTGTTGATTCGTGTAAGGTGAAAGATGTTAAAGTTGTTCCAGTAGATGAAAATAGTGTAACCGAGGAGATCAAAGGAATTGTGGTTGATGACAACTCTGCTGAAGACGAAGAGTCCAATGTGAATATGCTCGCTAGGCATGAGCAGTATTTGAAAGTCTTAAATGACGAAGCTGACATGAAGAAAAAGTCGGCGATGGTGGAGCAAATTAGGCTGTTGCTCAAGGATGATGAAGAGGCGAGGATATTTATGGGAGCTAATGGGTTTGTCCAGGGACTTCTACGGTACTTAGAGATAGCTGTGCAAGAACAAAATACCAAGGCTCAAGAAAGTGGAGCAATGGCTCTTTTCAATCTTGCAGTCAACAATGATAGGAACAAGGAAATAATGCTGGCAGAAGGGGTGATTTCATTGTTGGAGGAAATGATTATGAACCCAAATTCCCACGGATATGCAACGGCCCTCTATCTCAATGTCTCCTGTCTGGAAGAAGCAAAATCAATTATCGGCTCAAGTTGTGCGGTCCCTTTCTTAACTGAACTCCTCCACGCCAATACCGAAACACTATGCAAGCTCGATGCACTTCACACACTTTACAATCTCTCAACTGTACCCTCCAATATTCCCAACCTGATTTCTTCTGGAATCATCAAGGGACTTCAAGCCCTTCTTGCCGCCCGTCTCGATCGAACATGGACCGAAAAGTGCATAGCCATCTTGATAAATTTGGCTTCAAGTGAATCAGGAAGAGATCAAATGTCATCTACTCCAGAACTTATCAGTGGGTTGGCTGCAATATTAGACAATGGCGAACCCATTGAGCAGGAACAAGCAGTGGCTTGTCTCTTGATTTTGTGCAATGGGAATGAGAGGTGCAGTGAGATGGTCCTACAGGAAGGCGTAATCCCCGGGTTGGTGTCGATGTCTGTGAACGGGACAGCGAGAGCAACGGCAACGGGAATCGTCACCACCACCACCACCACCACCAGCAATGAGGCTAACACCAACACCGATACCGACCGACCAATCGGAGAGTAG 2181 44.15 MDISEVEENLFAASDAKLHRGMCKTLSAIYCKVLSIFPSLEAARPRSKSGIQALCSLHVALEKAKNTLQHCTESSKLYLAITGDSVLLKFEKVKSALQNSLKRVEDIVPQSIGYQVQEIMKELGSTQFFLDPLEKQVGDDIILLLQQGRTFNNTVDNNELEAFHQAATRLGINSSRAALAERRALKKLIDRSRTEDDKRKESIVAYLLHLMRKYSKLFRTEVSDDNDSQGSGPCSPTVQGSLDDSGPGGNGQAFERQLTKIGSFTLKPKIRKLEQIPLPPDELRCPISLQLMYDPVIIASGQTYERTCIEKWLSDGHNTCPKTQQKLSHLSLTPNFCVKGLIANWCEQHGVPVPDGPPDSLDLNYWRLALSEESLNLSPVNSVDSCKVKDVKVVPVDENSVTEEIKGIVVDDNSAEDEESNVNMLARHEQYLKVLNDEADMKKKSAMVEQIRLLLKDDEEARIFMGANGFVQGLLRYLEIAVQEQNTKAQESGAMALFNLAVNNDRNKEIMLAEGVISLLEEMIMNPNSHGYATALYLNVSCLEEAKSIIGSSCAVPFLTELLHANTETLCKLDALHTLYNLSTVPSNIPNLISSGIIKGLQALLAARLDRTWTEKCIAILINLASSESGRDQMSSTPELISGLAAILDNGEPIEQEQAVACLLILCNGNERCSEMVLQEGVIPGLVSMSVNGTARATATGIVTTTTTTTSNEANTNTDTDRPIGE 726
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28801416 28806306 + MELO3C010737.2.1 Cme03g02175 324186

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g02175 726 PANTHER U BOX DOMAIN-CONTAINING 1 697 - -
Cme03g02175 726 SUPERFAMILY ARM repeat 429 690 IPR016024 -
Cme03g02175 726 Pfam U-box domain 280 349 IPR003613 GO:0004842|GO:0016567
Cme03g02175 726 Gene3D - 8 105 IPR036537 GO:0007166
Cme03g02175 726 MobiDBLite consensus disorder prediction 222 253 - -
Cme03g02175 726 Gene3D - 416 717 IPR011989 -
Cme03g02175 726 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 352 IPR013083 -
Cme03g02175 726 MobiDBLite consensus disorder prediction 224 246 - -
Cme03g02175 726 CDD RING-Ubox_PUB 283 325 IPR045210 -
Cme03g02175 726 MobiDBLite consensus disorder prediction 703 726 - -
Cme03g02175 726 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Cme03g02175 726 SUPERFAMILY RING/U-box 279 355 - -
Cme03g02175 726 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Cme03g02175 726 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 697 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g02175 - - - csv:101220593 1302.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02175 Cme-Chr3:28801416 Cme11g01284 Cme-Chr11:19590109 1.09E-48 dispersed
Cme12g01299 Cme-Chr12:21054193 Cme03g02175 Cme-Chr3:28801416 5.83E-08 dispersed
Cme07g01660 Cme-Chr7:22259117 Cme03g02175 Cme-Chr3:28801416 7.21E-74 transposed
Cme10g00643 Cme-Chr10:4098358 Cme03g02175 Cme-Chr3:28801416 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme04g02015 . 1 1043 U-box Gene Family AT5G15400 76.0 0.0e+00 1575.1
Cme03g02175 . 1 637 U-box Gene Family AT1G24330 65.9 2.1e-232 802.4
Cme10g00643 . 1 758 U-box Gene Family AT1G24330 58.6 3.9e-231 798.1
Cme03g02175 . 1 642 U-box Gene Family AT1G67530 66.0 4.7e-232 801.2
Cme10g00643 . 1 758 U-box Gene Family AT1G67530 57.3 2.1e-224 775.8
Cme08g00355 . 1 362 U-box Gene Family AT4G21350 62.6 2.1e-121 432.6
Cme04g01429 . 135 461 U-box Gene Family AT3G07360 54.5 1.7e-79 293.1
Cme10g01508 . 326 513 U-box Gene Family AT1G71020 72.0 5.5e-74 275.4
Cme09g01399 . 251 451 U-box Gene Family AT1G71020 53.5 8.3e-54 208.4
Cme12g00199 CCT 98 267 U-box Gene Family AT1G71020 58.4 2.8e-49 193.4
Cme10g00093 . 210 413 U-box Gene Family AT1G71020 51.7 1.5e-47 187.6
Cme11g01284 CCT 255 424 U-box Gene Family AT1G71020 55.9 2.9e-46 183.3
Cme10g01508 . 72 717 U-box Gene Family AT1G23030 55.8 1.1e-106 384.4
Cme12g00199 CCT 98 467 U-box Gene Family AT1G23030 61.2 4.8e-46 183.0
Cme11g01284 CCT 93 634 U-box Gene Family AT2G28830 51.1 2.7e-99 359.8
Cme12g00199 CCT 5 479 U-box Gene Family AT2G28830 60.0 3.6e-83 306.2
Cme11g01284 CCT 3 648 U-box Gene Family AT3G46510 65.5 2.9e-158 555.8
Cme10g00093 . 5 620 U-box Gene Family AT3G46510 58.7 6.1e-124 441.8
Cme12g00199 CCT 2 482 U-box Gene Family AT3G46510 70.9 2.1e-111 400.2
Cme10g00093 . 9 619 U-box Gene Family AT3G54850 69.1 9.6e-167 583.9
Cme11g01284 CCT 13 627 U-box Gene Family AT3G54850 57.6 9.1e-117 417.9
Cme12g00199 CCT 12 471 U-box Gene Family AT3G54850 63.1 1.3e-78 291.2
Cme11g01052 . 92 622 U-box Gene Family AT5G42340 64.9 7.0e-120 428.3
Cme08g02117 . 9 671 U-box Gene Family AT5G01830 57.7 1.0e-195 680.2
Cme12g01264 . 1 714 U-box Gene Family AT1G29340 67.4 5.9e-245 844.0
Cme06g01534 . 27 442 U-box Gene Family AT5G37490 51.6 1.4e-111 400.2
Cme08g02024 . 8 425 U-box Gene Family AT3G52450 50.3 7.7e-115 411.0
Cme04g02322 . 1 404 U-box Gene Family AT2G35930 54.1 2.2e-119 426.0
Cme05g00240 CCT,ECH 13 412 U-box Gene Family AT2G35930 52.1 3.3e-115 412.1
Cme06g01339 . 9 424 U-box Gene Family AT3G19380 64.2 7.4e-147 517.3
Cme06g01339 . 1 424 U-box Gene Family AT1G49780 64.1 2.9e-151 531.9
Cme08g01071 CCT 1 407 U-box Gene Family AT5G64660 54.9 5.3e-121 431.4
Cme08g01071 CCT 1 407 U-box Gene Family AT5G09800 51.8 6.1e-106 381.3
Cme07g00269 . 1 453 U-box Gene Family AT3G49810 63.2 3.0e-154 542.0
Cme03g02117 . 1 395 U-box Gene Family AT3G49810 65.6 2.0e-142 502.7
Cme07g00269 . 1 453 U-box Gene Family AT5G65920 62.3 1.1e-148 523.5
Cme03g02117 . 1 395 U-box Gene Family AT5G65920 66.3 4.0e-143 505.0
Cme05g02054 . 4 720 U-box Gene Family AT2G19410 50.6 1.5e-209 726.5
Cme03g01705 . 358 701 U-box Gene Family AT2G19410 53.2 1.0e-96 351.7
Cme03g01705 . 392 698 U-box Gene Family AT4G25160 52.8 9.3e-85 312.0
Cme09g00333 . 39 553 U-box Gene Family AT5G40140 55.1 6.8e-92 335.1
Cme02g01939 . 71 581 U-box Gene Family AT5G40140 51.0 4.4e-67 252.7
Cme03g01335 . 4 815 U-box Gene Family AT1G76390 60.6 7.2e-268 920.2
Cme03g01335 . 13 815 U-box Gene Family AT1G20780 61.2 2.5e-276 948.3
Cme10g00643 . 1 767 U-box Gene Family AT1G27910 63.2 3.9e-263 904.4
Cme03g02175 . 1 696 U-box Gene Family AT1G27910 63.8 5.5e-249 857.4
Cme08g00648 . 1 592 U-box Gene Family AT5G67530 74.2 2.4e-260 894.8
Cme06g00245 . 3 157 U-box Gene Family AT5G67530 52.9 3.9e-45 179.9
Cme06g00455 . 36 552 U-box Gene Family AT1G04510 74.1 1.6e-220 762.3
Cme06g00455 . 36 521 U-box Gene Family AT2G33340 73.2 1.1e-207 719.5
Cme04g02015 . 1 1043 U-box Gene Family AT5G15400 76.0 0.0e+00 1575.1
Cme03g02175 . 1 637 U-box Gene Family AT1G24330 65.9 2.1e-232 802.4
Cme10g00643 . 1 758 U-box Gene Family AT1G24330 58.6 3.9e-231 798.1
Cme03g02175 . 1 642 U-box Gene Family AT1G67530 66.0 4.7e-232 801.2
Cme10g00643 . 1 758 U-box Gene Family AT1G67530 57.3 2.1e-224 775.8
Cme08g00355 . 1 362 U-box Gene Family AT4G21350 62.6 2.1e-121 432.6
Cme04g01429 . 135 461 U-box Gene Family AT3G07360 54.5 1.7e-79 293.1
Cme10g01508 . 326 513 U-box Gene Family AT1G71020 72.0 5.5e-74 275.4
Cme09g01399 . 251 451 U-box Gene Family AT1G71020 53.5 8.3e-54 208.4
Cme12g00199 CCT 98 267 U-box Gene Family AT1G71020 58.4 2.8e-49 193.4
Cme10g00093 . 210 413 U-box Gene Family AT1G71020 51.7 1.5e-47 187.6
Cme11g01284 CCT 255 424 U-box Gene Family AT1G71020 55.9 2.9e-46 183.3
Cme10g01508 . 72 717 U-box Gene Family AT1G23030 55.8 1.1e-106 384.4
Cme12g00199 CCT 98 467 U-box Gene Family AT1G23030 61.2 4.8e-46 183.0
Cme11g01284 CCT 93 634 U-box Gene Family AT2G28830 51.1 2.7e-99 359.8
Cme12g00199 CCT 5 479 U-box Gene Family AT2G28830 60.0 3.6e-83 306.2
Cme11g01284 CCT 3 648 U-box Gene Family AT3G46510 65.5 2.9e-158 555.8
Cme10g00093 . 5 620 U-box Gene Family AT3G46510 58.7 6.1e-124 441.8
Cme12g00199 CCT 2 482 U-box Gene Family AT3G46510 70.9 2.1e-111 400.2
Cme10g00093 . 9 619 U-box Gene Family AT3G54850 69.1 9.6e-167 583.9
Cme11g01284 CCT 13 627 U-box Gene Family AT3G54850 57.6 9.1e-117 417.9
Cme12g00199 CCT 12 471 U-box Gene Family AT3G54850 63.1 1.3e-78 291.2
Cme11g01052 . 92 622 U-box Gene Family AT5G42340 64.9 7.0e-120 428.3
Cme08g02117 . 9 671 U-box Gene Family AT5G01830 57.7 1.0e-195 680.2
Cme12g01264 . 1 714 U-box Gene Family AT1G29340 67.4 5.9e-245 844.0
Cme06g01534 . 27 442 U-box Gene Family AT5G37490 51.6 1.4e-111 400.2
Cme08g02024 . 8 425 U-box Gene Family AT3G52450 50.3 7.7e-115 411.0
Cme04g02322 . 1 404 U-box Gene Family AT2G35930 54.1 2.2e-119 426.0
Cme05g00240 CCT,ECH 13 412 U-box Gene Family AT2G35930 52.1 3.3e-115 412.1
Cme06g01339 . 9 424 U-box Gene Family AT3G19380 64.2 7.4e-147 517.3
Cme06g01339 . 1 424 U-box Gene Family AT1G49780 64.1 2.9e-151 531.9
Cme08g01071 CCT 1 407 U-box Gene Family AT5G64660 54.9 5.3e-121 431.4
Cme08g01071 CCT 1 407 U-box Gene Family AT5G09800 51.8 6.1e-106 381.3
Cme07g00269 . 1 453 U-box Gene Family AT3G49810 63.2 3.0e-154 542.0
Cme03g02117 . 1 395 U-box Gene Family AT3G49810 65.6 2.0e-142 502.7
Cme07g00269 . 1 453 U-box Gene Family AT5G65920 62.3 1.1e-148 523.5
Cme03g02117 . 1 395 U-box Gene Family AT5G65920 66.3 4.0e-143 505.0
Cme05g02054 . 4 720 U-box Gene Family AT2G19410 50.6 1.5e-209 726.5
Cme03g01705 . 358 701 U-box Gene Family AT2G19410 53.2 1.0e-96 351.7
Cme03g01705 . 392 698 U-box Gene Family AT4G25160 52.8 9.3e-85 312.0
Cme09g00333 . 39 553 U-box Gene Family AT5G40140 55.1 6.8e-92 335.1
Cme02g01939 . 71 581 U-box Gene Family AT5G40140 51.0 4.4e-67 252.7
Cme03g01335 . 4 815 U-box Gene Family AT1G76390 60.6 7.2e-268 920.2
Cme03g01335 . 13 815 U-box Gene Family AT1G20780 61.2 2.5e-276 948.3
Cme10g00643 . 1 767 U-box Gene Family AT1G27910 63.2 3.9e-263 904.4
Cme03g02175 . 1 696 U-box Gene Family AT1G27910 63.8 5.5e-249 857.4
Cme08g00648 . 1 592 U-box Gene Family AT5G67530 74.2 2.4e-260 894.8
Cme06g00245 . 3 157 U-box Gene Family AT5G67530 52.9 3.9e-45 179.9
Cme06g00455 . 36 552 U-box Gene Family AT1G04510 74.1 1.6e-220 762.3
Cme06g00455 . 36 521 U-box Gene Family AT2G33340 73.2 1.1e-207 719.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003521 0 9 3 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 48