Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g02175 ATGGATATTTCGGAGGTTGAAGAAAATCTTTTTGCTGCTAGTGATGCCAAGCTACATCGAGGAATGTGCAAGACCCTTTCTGCAATATACTGTAAAGTATTATCAATATTCCCTTCATTGGAAGCTGCACGACCTCGGAGCAAGTCTGGTATCCAGGCGTTATGTTCTTTGCATGTAGCACTTGAAAAAGCCAAGAATACTCTCCAACATTGTACAGAGAGCAGCAAACTTTACTTGGCTATAACCGGGGACTCTGTCCTGTTAAAGTTTGAGAAGGTAAAAAGTGCTCTACAAAATAGCCTTAAACGTGTTGAAGATATTGTTCCACAGTCAATTGGCTATCAGGTTCAGGAGATTATGAAGGAACTGGGGAGCACTCAATTTTTCCTCGATCCTTTAGAGAAGCAAGTTGGTGATGACATTATTTTATTGCTCCAACAGGGACGAACATTTAACAACACCGTTGACAACAATGAGCTTGAGGCTTTTCACCAAGCTGCTACTAGACTTGGAATAAACTCCTCAAGAGCAGCTCTTGCAGAAAGAAGAGCGCTAAAGAAACTAATTGACCGGTCTCGCACTGAAGATGACAAGAGGAAGGAATCAATCGTAGCTTATCTTTTGCATCTCATGAGGAAGTATTCCAAGTTATTTAGAACCGAAGTATCGGATGACAATGATTCACAGGGTTCTGGACCTTGTTCACCCACTGTTCAGGGCTCTCTTGATGACAGTGGACCTGGTGGAAATGGTCAAGCCTTCGAAAGGCAGCTAACAAAGATTGGTTCTTTTACTTTGAAGCCAAAAATTCGCAAATTGGAGCAGATTCCCCTTCCACCTGATGAGTTGAGGTGTCCTATATCATTGCAACTTATGTATGATCCGGTCATAATTGCTTCTGGGCAAACATATGAAAGGACTTGCATTGAGAAGTGGTTAAGTGACGGCCATAACACCTGCCCGAAAACTCAACAGAAACTCTCTCATCTTTCATTGACACCGAATTTCTGTGTCAAGGGCTTGATTGCAAACTGGTGTGAACAGCATGGAGTTCCTGTTCCTGATGGACCTCCAGATAGTCTTGACCTCAATTACTGGAGGCTCGCATTATCTGAAGAGTCTCTAAATTTGTCACCTGTGAACTCTGTTGATTCGTGTAAGGTGAAAGATGTTAAAGTTGTTCCAGTAGATGAAAATAGTGTAACCGAGGAGATCAAAGGAATTGTGGTTGATGACAACTCTGCTGAAGACGAAGAGTCCAATGTGAATATGCTCGCTAGGCATGAGCAGTATTTGAAAGTCTTAAATGACGAAGCTGACATGAAGAAAAAGTCGGCGATGGTGGAGCAAATTAGGCTGTTGCTCAAGGATGATGAAGAGGCGAGGATATTTATGGGAGCTAATGGGTTTGTCCAGGGACTTCTACGGTACTTAGAGATAGCTGTGCAAGAACAAAATACCAAGGCTCAAGAAAGTGGAGCAATGGCTCTTTTCAATCTTGCAGTCAACAATGATAGGAACAAGGAAATAATGCTGGCAGAAGGGGTGATTTCATTGTTGGAGGAAATGATTATGAACCCAAATTCCCACGGATATGCAACGGCCCTCTATCTCAATGTCTCCTGTCTGGAAGAAGCAAAATCAATTATCGGCTCAAGTTGTGCGGTCCCTTTCTTAACTGAACTCCTCCACGCCAATACCGAAACACTATGCAAGCTCGATGCACTTCACACACTTTACAATCTCTCAACTGTACCCTCCAATATTCCCAACCTGATTTCTTCTGGAATCATCAAGGGACTTCAAGCCCTTCTTGCCGCCCGTCTCGATCGAACATGGACCGAAAAGTGCATAGCCATCTTGATAAATTTGGCTTCAAGTGAATCAGGAAGAGATCAAATGTCATCTACTCCAGAACTTATCAGTGGGTTGGCTGCAATATTAGACAATGGCGAACCCATTGAGCAGGAACAAGCAGTGGCTTGTCTCTTGATTTTGTGCAATGGGAATGAGAGGTGCAGTGAGATGGTCCTACAGGAAGGCGTAATCCCCGGGTTGGTGTCGATGTCTGTGAACGGGACAGCGAGAGCAACGGCAACGGGAATCGTCACCACCACCACCACCACCACCAGCAATGAGGCTAACACCAACACCGATACCGACCGACCAATCGGAGAGTAG 2181 44.15 MDISEVEENLFAASDAKLHRGMCKTLSAIYCKVLSIFPSLEAARPRSKSGIQALCSLHVALEKAKNTLQHCTESSKLYLAITGDSVLLKFEKVKSALQNSLKRVEDIVPQSIGYQVQEIMKELGSTQFFLDPLEKQVGDDIILLLQQGRTFNNTVDNNELEAFHQAATRLGINSSRAALAERRALKKLIDRSRTEDDKRKESIVAYLLHLMRKYSKLFRTEVSDDNDSQGSGPCSPTVQGSLDDSGPGGNGQAFERQLTKIGSFTLKPKIRKLEQIPLPPDELRCPISLQLMYDPVIIASGQTYERTCIEKWLSDGHNTCPKTQQKLSHLSLTPNFCVKGLIANWCEQHGVPVPDGPPDSLDLNYWRLALSEESLNLSPVNSVDSCKVKDVKVVPVDENSVTEEIKGIVVDDNSAEDEESNVNMLARHEQYLKVLNDEADMKKKSAMVEQIRLLLKDDEEARIFMGANGFVQGLLRYLEIAVQEQNTKAQESGAMALFNLAVNNDRNKEIMLAEGVISLLEEMIMNPNSHGYATALYLNVSCLEEAKSIIGSSCAVPFLTELLHANTETLCKLDALHTLYNLSTVPSNIPNLISSGIIKGLQALLAARLDRTWTEKCIAILINLASSESGRDQMSSTPELISGLAAILDNGEPIEQEQAVACLLILCNGNERCSEMVLQEGVIPGLVSMSVNGTARATATGIVTTTTTTTSNEANTNTDTDRPIGE 726
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28801416 28806306 + MELO3C010737.2.1 Cme03g02175 324186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g02175 726 PANTHER U BOX DOMAIN-CONTAINING 1 697 - -
Cme03g02175 726 SUPERFAMILY ARM repeat 429 690 IPR016024 -
Cme03g02175 726 Pfam U-box domain 280 349 IPR003613 GO:0004842|GO:0016567
Cme03g02175 726 Gene3D - 8 105 IPR036537 GO:0007166
Cme03g02175 726 MobiDBLite consensus disorder prediction 222 253 - -
Cme03g02175 726 Gene3D - 416 717 IPR011989 -
Cme03g02175 726 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 352 IPR013083 -
Cme03g02175 726 MobiDBLite consensus disorder prediction 224 246 - -
Cme03g02175 726 CDD RING-Ubox_PUB 283 325 IPR045210 -
Cme03g02175 726 MobiDBLite consensus disorder prediction 703 726 - -
Cme03g02175 726 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Cme03g02175 726 SUPERFAMILY RING/U-box 279 355 - -
Cme03g02175 726 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Cme03g02175 726 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 697 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02175 Cme-Chr3:28801416 Cme11g01284 Cme-Chr11:19590109 1.09E-48 dispersed
Cme12g01299 Cme-Chr12:21054193 Cme03g02175 Cme-Chr3:28801416 5.83E-08 dispersed
Cme07g01660 Cme-Chr7:22259117 Cme03g02175 Cme-Chr3:28801416 7.21E-74 transposed
Cme10g00643 Cme-Chr10:4098358 Cme03g02175 Cme-Chr3:28801416 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g02175 - - csv:101220593 1302.35