Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g02188 ATGTACTTGTCTGATAAGCCTCGCCCAATTGATATTTACAAGGAAGAAGGTAGTAGAGATATGATGATCGAGGTCGCCTCCAATGGCGACCACCATATTCAACCACATCAGCCACAGCCACAGCCACAACAGACTCATCAGCAGCACCAAATGATGCTTGGTGATAGCAGTGGTGAGGATCATGAAGTCAAGGCTCCTAAGAAGCGAGCGGAGACTTGGGTTCAAGACGAGACTCGAAGCTTAATTGCCCTACGTAGGGAGATGGATGGATTGTTTAATACCTCGAAATCCAACAAGCATTTGTGGGAGCAGATATCCGCTAAGATGAGGGAAAGGGGATTTGATCGCTCCCCGACTATGTGTACCGATAAGTGGAGGAACTTGCTTAAGGAGTTCAAGAAAGCAAAGCATCAGGACAGGGGAAGTGGCTCTGCTAAGATGTCGTGTTACAAGGAGATTGAAGAAATATTGAAGGAAAGAAGCAAGAGTACACAGTACAAAAGCCCCACGCCACCCAAGATTGATTCATATATGCAATTCTCAGATAAAGGAATAGAGGATAATGGTCTATCGTTTGGACCTGTTGAAGGTGGCAGGCCTTCACTCAATCTTGAAAGACAACTAGATCACGATGGACATCCCCTTGCCATCACAGCAGCCGATGCAGTTGCTGCAACAGGCATTCCACCTTGGAATTGGAGAGAGGCACCTGGAAATGGTGGGGAGAGTCAGGCATTTGGCGGGAGAGTAATATCAGTGAAGTGGGGGGATTACACCAGAAGAATTGGTGTTGATGGCACCGCAGAGGCAATCAAGGAGGCAATCAAGTCTGCATTCGGGTTGAGAACAAAACGTGCATTTTGGTTAGAGGATGAGGACCAGGTTGTCAGAAGTCTGGACAGGGACATGCCTTTAGGAAACTACACTCTTCACCTTGACGAAGGTGTGGCTGTTAAAATCTGCCTCTATGATGAATCTAACCACTTACCGGTACATTCTGAAGACAAAGTCTTTTACATTGAAGAAGATTACCGAGATTTTTTAGCTCGTCGAGGCTGGACAAGCCTACGGGAGTTTGATGGGTATAGAAACATTGATAATATAGATGATCTCCGTTCTGGTGCATTATACCGTAGAAACATCGATAATATGGATGATCTCCGTCCTGGTGCAATATACCGTGGTGTAAGCTGA 1194 45.98 MYLSDKPRPIDIYKEEGSRDMMIEVASNGDHHIQPHQPQPQPQQTHQQHQMMLGDSSGEDHEVKAPKKRAETWVQDETRSLIALRREMDGLFNTSKSNKHLWEQISAKMRERGFDRSPTMCTDKWRNLLKEFKKAKHQDRGSGSAKMSCYKEIEEILKERSKSTQYKSPTPPKIDSYMQFSDKGIEDNGLSFGPVEGGRPSLNLERQLDHDGHPLAITAADAVAATGIPPWNWREAPGNGGESQAFGGRVISVKWGDYTRRIGVDGTAEAIKEAIKSAFGLRTKRAFWLEDEDQVVRSLDRDMPLGNYTLHLDEGVAVKICLYDESNHLPVHSEDKVFYIEEDYRDFLARRGWTSLREFDGYRNIDNIDDLRSGALYRRNIDNMDDLRPGAIYRGVS 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28871494 28875296 - MELO3C010724.2.1 Cme03g02188 324199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g02188 397 Gene3D - 73 135 - -
Cme03g02188 397 MobiDBLite consensus disorder prediction 32 54 - -
Cme03g02188 397 PANTHER - 5 378 - -
Cme03g02188 397 MobiDBLite consensus disorder prediction 55 71 - -
Cme03g02188 397 CDD GT1 71 136 - -
Cme03g02188 397 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-4 5 378 - -
Cme03g02188 397 ProSiteProfiles Myb-like domain profile. 65 129 IPR001005 -
Cme03g02188 397 Pfam Myb/SANT-like DNA-binding domain 72 156 IPR044822 -
Cme03g02188 397 SMART sant 69 131 IPR001005 -
Cme03g02188 397 MobiDBLite consensus disorder prediction 30 71 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02188 Cme-Chr3:28871494 Cme08g02207 Cme-Chr8:28103645 3.12E-10 dispersed
Cme03g02188 Cme-Chr3:28871494 Cme04g02727 Cme-Chr4:32646707 3.91E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41114 PF13837 Myb_DNA-bind_4 2.80E-20 CL0123 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g02188 - - csv:101222888 767.689