Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g02198 ATGGAAAATGGCTTCTCTTCTCCTCGAAGCGATGCGTTTCCTATCGGTCTTCGTGTTCTTGTCGTTGATGATGATCCAACATGGCTGAAAATCCTGGAAAAGATGCTCAAGAAGTGCTCTTACGAAGTGACTACATGTTGTTTGGCAAGGGAGGCTCTGAGCCTGCTTAGGGAGAGAAAAGATGGATATGATATCGTAATCAGCGACGTCAACATGCCTGATATGGATGGATTTAAACTCCTTGAGCATGTGGGATTGGAAATGGACCTGCCAGTTATCATGATGTCGGTTGACGGAGAAACAAGTAGAGTGATGAAAGGGGTTCAACATGGTGCTTGTGATTATCTTCTAAAGCCGATACGAATGAAAGAACTTAGGAATATATGGCAGCACGTATTGCGAAAGAAGATACAAGAGGGAAGAGATATTGAAGGGCATGATGTTATTGAAGGGATCCACATACTACGAAATGTGGCAGATAGATACGATGATAGCCAGTTCCTCAGGGGAGAGGAACTGTTTTCAGTGAGGAAACGAAAAGATATTGATAAGCATGAGGACAAAGACTTTTGTGACACTTCTTCCGCAAAGAAAGCAAGGGTTGTTTGGTCAGTTGATTTGCACCAGAAATTTGTAAAGGCAGTAAACCAGATAGGCTTTGACAAAGTTGGTCCTAAAAAGATACTTGATCTGATGAATGTCCCTTGGCTAACTAGGGAAAATGTAGCTAGCCACTTGCAGAAATATCGCCTCTATTTGAGTCGACTGCAGAAAGAAAATGATCCAAAAGCTTGCTTTGTTGTTGGGATGAAACATAAAGATCCGTGTTCGAAGGATGGAGATGGAAACTTCGGCCTTCATAGTTCATTAGCGGTGCCACAAAATGATGTCACAAACAGCAGCTTTAGCTTTTCAGGTGATAACTTCCTGCTACAGAATGTAGATTCCATAGGCTGTGAAGTTGATAGGAAAAGGGTTGTTCAAGAGCATACATCAGAGCCAAAAAGAGCTGCTGGTAGGAGTGTTCCTGAACCAATAAAGGCGCGGTGTACGCAGATGAAATTCAACAACACTATTCACCCGGTTGAACCTGAAGGGAAGTTTCCAGCATTTGATCCAAGCAACCGAAGCTGTTACCCTTGGGTTGAAGCTCCAGAAATCAAGTTCAAACAAGAAAGCAAGCCAATCGTGCATTTAGAAGGAGATTTCAATCAATTCCCTCCAACGGTTCCGCCACACCAAGTTCAAATGGACCAACTACAATCGATTTCGTCCATTAGTTCTGGAAGGTCAGCAACAGAGAAAGATATAGCAAGCTCCATTGAAAGTAAGCCTCCATATTCTGAAAACTGTAGCCAACAGAGGGTCCATTTAAATCTACCAAAAACACCAACTGATTCATTTGCTGGGAAGGCAAAGAGTTTCAACGAAATGAATGATCATTTTGATCCCAATTCAACTACAACTACTCCATTGGGCAAAAACCAGAATTTCAATCCTAGCTGCATTTCAACTGATTTAGGAAGTGGATTACCTTTTGCAACCATTGATGAAGACTTGCAGGGCTTTTTGCTTCAAGATGGCTGCTATCCAAAGAACCTTGAACATCAGATTATAGAGTTTCCAGATTATGGTGATCCAGGCATCTTCACTGAAGTTCCTACTCACCTTTACGATGCAATGAGGTTTGGCTACGATTATTCCTATGACCCAACTGAGTATCCGGTGATAGATGAAGGCCTATTTATTGCATGA 1755 42.11 MENGFSSPRSDAFPIGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCCLAREALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVLRKKIQEGRDIEGHDVIEGIHILRNVADRYDDSQFLRGEELFSVRKRKDIDKHEDKDFCDTSSAKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDPKACFVVGMKHKDPCSKDGDGNFGLHSSLAVPQNDVTNSSFSFSGDNFLLQNVDSIGCEVDRKRVVQEHTSEPKRAAGRSVPEPIKARCTQMKFNNTIHPVEPEGKFPAFDPSNRSCYPWVEAPEIKFKQESKPIVHLEGDFNQFPPTVPPHQVQMDQLQSISSISSGRSATEKDIASSIESKPPYSENCSQQRVHLNLPKTPTDSFAGKAKSFNEMNDHFDPNSTTTTPLGKNQNFNPSCISTDLGSGLPFATIDEDLQGFLLQDGCYPKNLEHQIIEFPDYGDPGIFTEVPTHLYDAMRFGYDYSYDPTEYPVIDEGLFIA 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28932154 28935924 - MELO3C010714.2.1 Cme03g02198 324209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g02198 584 CDD REC_typeB_ARR-like 19 133 - -
Cme03g02198 584 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 198 251 IPR006447 GO:0003677
Cme03g02198 584 Pfam Myb-like DNA-binding domain 200 250 IPR001005 -
Cme03g02198 584 PANTHER TWO-COMPONENT RESPONSE REGULATOR 2 489 IPR045279 GO:0009736
Cme03g02198 584 Gene3D - 194 257 - -
Cme03g02198 584 Gene3D - 17 172 - -
Cme03g02198 584 PANTHER TWO-COMPONENT RESPONSE REGULATOR 2 489 - -
Cme03g02198 584 SUPERFAMILY CheY-like 16 141 IPR011006 -
Cme03g02198 584 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
Cme03g02198 584 SMART REC_2 17 129 IPR001789 GO:0000160
Cme03g02198 584 MobiDBLite consensus disorder prediction 424 453 - -
Cme03g02198 584 SUPERFAMILY Homeodomain-like 196 255 IPR009057 -
Cme03g02198 584 PIRSF RR_ARR_type-B 1 522 IPR017053 GO:0003677|GO:0003700|GO:0009736
Cme03g02198 584 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02198 Cme-Chr3:28932154 Cme07g00108 Cme-Chr7:673597 1.94E-90 dispersed
Cme09g01417 Cme-Chr9:19386981 Cme03g02198 Cme-Chr3:28932154 1.99E-25 dispersed
Cme12g01975 Cme-Chr12:25560215 Cme03g02198 Cme-Chr3:28932154 4.19E-20 dispersed
Cme03g02198 Cme-Chr3:28932154 Cme06g00764 Cme-Chr6:5045134 5.97E-97 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41115 PF00072 Response_reg 1.20E-24 CL0304 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g02198 - K14491 csv:101204370 1129.01