Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g02206 ATGGAAAATCCCAAATTTGTTGTGATCATGATAATAAGTATAAAAGTATTAGTGTTTAGTATGGTTATGCTCCAAATGTGCTCCATTTCATCGTCTTCTCCGGTCCCCGATCCTGATTTAGTCGCCCAAGAAGTTCTTACGAGCATCAACAATGCAACAACAAGAAGGAATTTGGGGTTCCTATCCTGTAGAACTGGCAACCCCATAGACGACTGCTGGCGTTGCGATGCCAATTGGGAAAAGAACCGAAAGAGGCTAGCCAACTGCGCCATTGGGTTCGGAAAACGAGCCATCGGCGGCAAAAACGGCAGATACTACATCGTGACGGACCCATCCGACAATGACGTGGTGAACCCAAAACCAGGCACACTCCGGCACGCCGTAATCCAAAAGGAACCCTTATGGATCATTTTCAAGCGCGACATGGTCATCAAATTAAAAGCAGAGCTTCTGATGAACTCTTTCAAAACCATCGACGGGCGTGGCGTCTCCGTCCACATCGCCGGAGGGCCTTGCATTACCATTCAATTTGTGACCAACATTATAATCCACGGCATTAACATTCACGATTGCAAGCAAGGTGGGAACACTTACGTGAGAGACTCGCCGGAGCATTACGGTTGGAGGACGGTGTCGGACGGGGATGGGATATCGATATTTGGAGGAAGCCATGTTTGGATTGACCATTGCTCTTTGTCGAATTGCCGTGATGGGTTGATTGATGCGATTCATGGATCGACGGCTATTACTGTTTCAAACAATTACATGACTCATCATAACAAAGTTATGCTTTTGGGACATAGTGATTCCTATACACAAGATAAGAACATGCAAGTCACCATTGCTTTTAACCATTTTGGTGAGGGCCTTGTTCAAAGAATGCCACGGTAA 891 46.02 MENPKFVVIMIISIKVLVFSMVMLQMCSISSSSPVPDPDLVAQEVLTSINNATTRRNLGFLSCRTGNPIDDCWRCDANWEKNRKRLANCAIGFGKRAIGGKNGRYYIVTDPSDNDVVNPKPGTLRHAVIQKEPLWIIFKRDMVIKLKAELLMNSFKTIDGRGVSVHIAGGPCITIQFVTNIIIHGINIHDCKQGGNTYVRDSPEHYGWRTVSDGDGISIFGGSHVWIDHCSLSNCRDGLIDAIHGSTAITVSNNYMTHHNKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPR 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28973335 28975450 + MELO3C010706.2.1 Cme03g02206 324217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g02206 296 Gene3D - 66 296 IPR012334 -
Cme03g02206 296 Pfam Pectate lyase 175 296 IPR002022 -
Cme03g02206 296 SUPERFAMILY Pectin lyase-like 51 296 IPR011050 -
Cme03g02206 296 PRINTS Pollen allergen Amb family signature 293 296 IPR018082 -
Cme03g02206 296 PRINTS Pollen allergen Amb family signature 89 106 IPR018082 -
Cme03g02206 296 PRINTS Pollen allergen Amb family signature 149 165 IPR018082 -
Cme03g02206 296 PRINTS Pollen allergen Amb family signature 213 234 IPR018082 -
Cme03g02206 296 PRINTS Pollen allergen Amb family signature 113 138 IPR018082 -
Cme03g02206 296 PANTHER PECTATE LYASE 18-RELATED 19 296 IPR045032 GO:0030570
Cme03g02206 296 PANTHER PECTATE LYASE 22-RELATED 19 296 - -
Cme03g02206 296 SMART amb_all 141 296 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02206 Cme-Chr3:28973335 Cme05g00660 Cme-Chr5:7209670 2.26E-153 dispersed
Cme12g01634 Cme-Chr12:23484887 Cme03g02206 Cme-Chr3:28973335 6.85E-167 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g02206 K01728 - csv:101208076 567.77