Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme03g02216 | ATGTCAAAACCCTGGGGTGGAATCGGAGCCTGGGCCGCTGATGCCGAGCGTGCTGAGGCTGAGGAACGGGAGGCACAAGCCGCTGCCGCTGCCGCTGCCGCTGCCTCCCAAGCTGAATCCAAGAATTTCCCTAGCCTTAGGGAAGCTGTTAGCACCAAGCCCAAGAAGAAGAAGATGTCTCTGTCGGAATTCACTATGGGTACCCTCACGGGTCCTGGCACCGGAGGTAGGTTAACGGACAGCCAGGGCTTGACACCGGAGGAAATGATTCGGCTTCCAACTGGTCCAAAAGACCGCTCTGGCGAGGAAGTGCGTTCTGGCCGCCTCGGTGGGGGATTTCCCACTTATGATCGGCAAAGTATGTCTGCTGGGCGATTTCGAGACCGTGATGAAGGCGATGGGTCCTGGGGTGGTGGTCGACGGTCGTATGGTGGGTTCGACGAGGAACGCAGAGGTCCATCTCCTAGGGCTTCTAATTTTGATCAACCTTCGAGGGCTGACGAGGTGGATAATTGGGCAATGACGAAGAAATCTCCCACATTGGATTCGGGTCGACAGAATAGGTATGGGTCATTAGGCGGTGGCATGGGTGGGATGGCATCTAGGGCAGACGAGGTCGATAACTGGGCAAGCGTTAAAAAGCCTATTCCGTCGAGATCCTCCACATTTGGTTCTGGTTATCGTGAGGCGAACGAGCCTGATCGCTGGGGTAGAGGCCGTTCGCGTGATAGTGACACAGAACGACCCCGATTAGTATTGGATCCACCCAAAGGTAATGTCGTTACAAATGAAGCCACGAGGACAAACAAGCCAAATCCTTTTGGAGCAGCAAGGCCGAGAGAGGAGGTTTTGGCTGAGAAAGGGTTGGATTGGAAAAAGTTGGATACAGAAATTGAGGCCAAAAGAACCAGTAGGCCAACCAGTGCTCACTCTAGCAGGCCTTCGAGTGCTCAATCCAGCCGTTCGGAGGGTCCAGGATTACAGGGCGTAGAAAATATGGCGAAGCCGAGGCCAAAAGTCAATCCATTTGGGGATGCCAAACCTAGGGAAGTTTTGCTGGAGGAACGTGGCAAGGACTGGCGAAAGATTGATCTGCAACTCGAGCATCGCGCCGTTGACAGGCCTGAAACAGAAGAGGAAAAGATGTTGAAAGAGGAAATTGATGTCCTAAGAAAGGAACTTGAGGAAGGGTTATCTCTGAATGCTAACAAAGAATCGGTGCAAGAATCTGCTGGAGAGATGCAAAATCTGCGTGAGAGAATTAATAAAAAAGAACATGAACTGGAGACGCTGATCCTTGATTTGGATGACAAAGTTCGCTTTGGAAAGAAAGCTACTGACAGACCCGGCTCTGGAGCAGGCAGGGCTGCCGTCTTTCCAGAAAGACCTGGCTCTGGAGCAGGCAGGGCTGCCGTCTTTCCAGAAAGACCTGGCTCTGGGGCAGGTAGGGCTGCCGTCTTTCCAGAAAGACCTGGCTCTGGAGCAGGTAGGGCCACTGTCTTTCCAGAAAGACCACCTTCTCAAGGATCCTTTGACGAGTCCAGAAGTTTTGAATCTGTGGATAGACCTCGATCACGTGGCACTGCAGATGTATGGAGTAGACCCGCTGATGATAGAAAACCAATTCAAGGTGCCAGAGATGGAGGATTTTTGGGCAACAGAGACATGGAGAGGTCGAGGGATAGATGGTAA | 1692 | 52.48 | MSKPWGGIGAWAADAERAEAEEREAQAAAAAAAAASQAESKNFPSLREAVSTKPKKKKMSLSEFTMGTLTGPGTGGRLTDSQGLTPEEMIRLPTGPKDRSGEEVRSGRLGGGFPTYDRQSMSAGRFRDRDEGDGSWGGGRRSYGGFDEERRGPSPRASNFDQPSRADEVDNWAMTKKSPTLDSGRQNRYGSLGGGMGGMASRADEVDNWASVKKPIPSRSSTFGSGYREANEPDRWGRGRSRDSDTERPRLVLDPPKGNVVTNEATRTNKPNPFGAARPREEVLAEKGLDWKKLDTEIEAKRTSRPTSAHSSRPSSAQSSRSEGPGLQGVENMAKPRPKVNPFGDAKPREVLLEERGKDWRKIDLQLEHRAVDRPETEEEKMLKEEIDVLRKELEEGLSLNANKESVQESAGEMQNLRERINKKEHELETLILDLDDKVRFGKKATDRPGSGAGRAAVFPERPGSGAGRAAVFPERPGSGAGRAAVFPERPGSGAGRATVFPERPPSQGSFDESRSFESVDRPRSRGTADVWSRPADDRKPIQGARDGGFLGNRDMERSRDRW | 563 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 29025923 | 29030207 | + | MELO3C010696.2.1 | Cme03g02216 | 324227 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme03g02216 | 563 | MobiDBLite | consensus disorder prediction | 1 | 350 | - | - | |
| Cme03g02216 | 563 | MobiDBLite | consensus disorder prediction | 63 | 81 | - | - | |
| Cme03g02216 | 563 | MobiDBLite | consensus disorder prediction | 515 | 544 | - | - | |
| Cme03g02216 | 563 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B1 | 1 | 481 | - | - | |
| Cme03g02216 | 563 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B1 | 489 | 563 | - | - | |
| Cme03g02216 | 563 | MobiDBLite | consensus disorder prediction | 307 | 326 | - | - | |
| Cme03g02216 | 563 | Coils | Coil | 400 | 434 | - | - | |
| Cme03g02216 | 563 | MobiDBLite | consensus disorder prediction | 231 | 252 | - | - | |
| Cme03g02216 | 563 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B | 1 | 481 | IPR010433 | GO:0003743 | |
| Cme03g02216 | 563 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B | 489 | 563 | IPR010433 | GO:0003743 | |
| Cme03g02216 | 563 | MobiDBLite | consensus disorder prediction | 122 | 136 | - | - | |
| Cme03g02216 | 563 | Coils | Coil | 15 | 38 | - | - | |
| Cme03g02216 | 563 | Pfam | Plant specific eukaryotic initiation factor 4B | 489 | 549 | IPR010433 | GO:0003743 | |
| Cme03g02216 | 563 | Pfam | Plant specific eukaryotic initiation factor 4B | 1 | 469 | IPR010433 | GO:0003743 | |
| Cme03g02216 | 563 | MobiDBLite | consensus disorder prediction | 442 | 563 | - | - | |
| Cme03g02216 | 563 | MobiDBLite | consensus disorder prediction | 280 | 306 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme03g02216 | Cme-Chr3:29025923 | Cme11g00411 | Cme-Chr11:4100462 | 3.52E-35 | dispersed | |
| Cme03g02216 | Cme-Chr3:29025923 | Cme01g01280 | Cme-Chr1:16162001 | 3.36E-43 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme03g02216 | - | - | cmo:103487724 | 1009.21 |