Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g02231 ATGAAGACTGGATCCCCACTTAGGTTGTTGATTTTGATCGGTGCTCTTCTGCTGCTTCATTCATCCACCGTGGCAGACCCCAGATCCCGAACCGCGAAGATACTATGTTCAACAGTGCTAGAGCACAACACAACTGCCTTCGTGCCCAATTTCGTGGCCACAATGCAAATAATAAGTGACCAAATGCGAACCGGTGGGTTTGGAGTGGCAGTTGTGGGTAAGGGGCCGGACGCCAACTACGGACTCGCTCAATGTTACGGGGATTTGTCGCTGATGGATTGTGTGTTGTGTTATGCGGAAGCCCGTACTGTCCTTCCTCAATGCTTCCCTTACAACGGCGGCCGGATTTTCCTGGATGGCTGCTTCATGAGGGCTGAGAACTACAGCTTTTATGACGAATTTGCAGGGCCTCTTGACAGGGCTGTGTGTGGTAACAATTCCATCACCAACTCCATTTTTAGACAGTCGGCCAGGCAAGCAGCGGCCCGAGCAATTGAAACTGCGCCCAACAATGGAGGGTATGCTAGAATTCAAGTGGCTCCACCTGGAACCTCCAATGCCTCCGTTTACCTGTTGGCTCAGTGCTGGAGGAATTTGAATCGCACCTCCTGCACTTCCTGTTTGCAAAACGCCTCTGCTTCTATCTTGAAATGCTTACCTCGATCTGAAGCAAGAGCCCTCAACACAGGTTGCTTCATGAGATACTCTAATGTCGACTTCTTAAATGCGGAAGCTTCAGCTTCAAGGTCAAGGGGTACTATTATAGAAATTGTAGTCTCACTGGTGAGCTCTGTTGCTGTTTTAGTCGTTGGAGTGTTAATTGGAATCTATGTCTGGAATAACAGATATGTAAAGAAGAAACGAAGAGGTTCAAACGATGCAAACAAGATGGCAAAAACACTAAACAATAGTAGCTTGAATTTCAAGTACTCTACCCTTGAAAAGGCAACAGGATCCTTTGCTGAGGCTAACAAGCTTGGACAAGGAGGATTTGGCACTGTTTATAAGGGAGTTCTATCGGATGGAAGAGAGATAGCTGTGAAGAGGCTTTTCTTCAATAACAAACATAGAGCAGCAGATTTTTACAATGAAGTAAACATAATCAGTAGTGTAGAGCACAAAAATTTAGTACGGTTGCTCGGTTGTAGTTGTTCTGGACCTGAAAGTCTGCTTGTCTATGAATACCTTGCCAACAAGAGTCTCGACCGCTTCATTTTCGATCGAGATAGAGGTAAAGTACTCAATTGGGAGAAGAGATATGATATTATTGTAGGAACAGTTGAAGGTCTGGCATACCTTCATGAGAACTCGAAAACCAAGATCATTCACAGAGACATCAAGGCTAGCAACATCCTGCTAGACTCCAAGCTTCGAGCCAAAATAGCCGATTTTGGATTAGCTAGATCATTTGAAGAAGACGAGAGTCACATCAGCACTGCCATTGCTGGAACCTTGGGATACATGGCGCCAGAGTATTTAGCTCATGGGCAGCTAACAGAAAAGGCAGATGTGTACAGTTTTGGTGTGGTTTTGCTGGAGACTGTGACTGGCATACAAAACAGTAGAAGCAAAACCTCAGACTACTTGGAAAGCATAGTACTAATTGCATGGAAGCATTTTCAATCAGGAACAACTGAAAGGATATTGGATCCGAACCTAATGGTTGAGGAAGATAGGAGCACAAAAGAGGAAATATTGAGAGTGGTGCAGATAGGGCTTCTTTGCACACAGGAGAGTGCATCTCTCCGACCCACAATGTCGAAGGTACTGCAGATGCTGATGAAGAAGGAAGAGAAACTTCCGACCCCAACAAACCCACCGTTCATGGACGAGAGGACAATGGAATTAAACGACACCAGTGAGGACCCATCATGCTTCAACCTCACCGAAGCTTGTTCCTCAGCTGCTACTGTCACCCATAGCTCATTTCATCCCAGTTCCATTTGGGTAGAACCTTCCACAGAAACTGTCATCCAATTTTCTTCTTCTCCTTCTCCTTCTTCGGCTTCCTCTGGATCCAACAGAAATCCAGATTCCATGGGGATCCAGCTTGTTTATGCTTCCAAATATATCCTATTTTCGGTCATCACTTTACTTCTGCTGCAAGCAACTTCGATTTTAGGGAAGCCAAGAGATCGAACTGTGAGAGTGATTTGCGGGAAAGAACTGGAGCACAACACCACCGCATATGTCCCAAACTTTTTTGGTTCCATGGAAAAAGTTAGACAACAAATCAGAACTTCAGGATTTGGAACCGCTGGTACAGGAATAGGACCCGATGCCAGCTATGGGCTTGCTCAATGCCATGGAGATCTCTCATCCCTTGAATGTGTGCTGTGTCATTCTCAAGCACGTACAATGCTTCCCCAATGCTTTCCTTTCAACGGCGGTCGAGCTTTCATCGATGGCTGCTTCCTGAGGTTCGAAAACTACAGCTTCTTTGATGAATATAAAGGACCTGAAGACACTGCAATTTGCGGGAACTTTACCCAAAATGACCCCAACTACAGACAAGCAGCCACGGAGGCAGTGATGCAAGTGGTCAATGGTGCACCAGACAACCGAGGCTTTGCGAAAGCTCGAATGGCTGTGGCCGGGATGGCAAATGAATCTGCCGCTTATGCTCTGGGTCAGTGCTGGAGAAGTTTAAACCGCAGTTCTTGCAGCACATGTTTGCAAATTGCTTCTGCTTCAATGTTAAGATGTTTACCTCGATCGGAAGCACGGGCATTGAACACAGGCTGCTTCATGAGATATTCAAATACAGACTTCCTCAATCAGGACATTAAAAATAGTTCCAGAGGAGGTTCAACTGACGTGAAGAAGTTGGCAAAAACTCTTCAAGATAGTAACTTGGAATTCAAGTACTCAACCCTTGAAAAAGCAACAAACAATTTCAGCCTAGATAACAAGATTGGACAAGGGGGGTTTGGCTCAGTTTATAAGATATGGAGACATTTCCAAGCAGGCACAGTTGAGAGATTATTTGATCCAAGTCTCAATCTTCAGAATCACTATAACAAGAAAGTAAAGGGCGAGGTAGTGAGAGTGGTGCACATAGGGCTCTTATGCATCCAGGAGATTCCATCTCTACGGCCAACAATGTCAAAGGTACTACGAATGCTGACCATGGAGGAAGAGCATCTTCCTCCACCCACCAAACCACCCTTCATGGATGAGATGACCATGGAACTTGATGATTCATGCAAGTACTCACGATGTTATTCGAATACGGAGGGATCTTCTACTGCCACAGTCGGCCATAGTTCATTTTATCCCAGATAA 3285 45.39 MKTGSPLRLLILIGALLLLHSSTVADPRSRTAKILCSTVLEHNTTAFVPNFVATMQIISDQMRTGGFGVAVVGKGPDANYGLAQCYGDLSLMDCVLCYAEARTVLPQCFPYNGGRIFLDGCFMRAENYSFYDEFAGPLDRAVCGNNSITNSIFRQSARQAAARAIETAPNNGGYARIQVAPPGTSNASVYLLAQCWRNLNRTSCTSCLQNASASILKCLPRSEARALNTGCFMRYSNVDFLNAEASASRSRGTIIEIVVSLVSSVAVLVVGVLIGIYVWNNRYVKKKRRGSNDANKMAKTLNNSSLNFKYSTLEKATGSFAEANKLGQGGFGTVYKGVLSDGREIAVKRLFFNNKHRAADFYNEVNIISSVEHKNLVRLLGCSCSGPESLLVYEYLANKSLDRFIFDRDRGKVLNWEKRYDIIVGTVEGLAYLHENSKTKIIHRDIKASNILLDSKLRAKIADFGLARSFEEDESHISTAIAGTLGYMAPEYLAHGQLTEKADVYSFGVVLLETVTGIQNSRSKTSDYLESIVLIAWKHFQSGTTERILDPNLMVEEDRSTKEEILRVVQIGLLCTQESASLRPTMSKVLQMLMKKEEKLPTPTNPPFMDERTMELNDTSEDPSCFNLTEACSSAATVTHSSFHPSSIWVEPSTETVIQFSSSPSPSSASSGSNRNPDSMGIQLVYASKYILFSVITLLLLQATSILGKPRDRTVRVICGKELEHNTTAYVPNFFGSMEKVRQQIRTSGFGTAGTGIGPDASYGLAQCHGDLSSLECVLCHSQARTMLPQCFPFNGGRAFIDGCFLRFENYSFFDEYKGPEDTAICGNFTQNDPNYRQAATEAVMQVVNGAPDNRGFAKARMAVAGMANESAAYALGQCWRSLNRSSCSTCLQIASASMLRCLPRSEARALNTGCFMRYSNTDFLNQDIKNSSRGGSTDVKKLAKTLQDSNLEFKYSTLEKATNNFSLDNKIGQGGFGSVYKIWRHFQAGTVERLFDPSLNLQNHYNKKVKGEVVRVVHIGLLCIQEIPSLRPTMSKVLRMLTMEEEHLPPPTKPPFMDEMTMELDDSCKYSRCYSNTEGSSTATVGHSSFYPR 1094
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29095583 29102691 + MELO3C010681.2.1 Cme03g02231 324242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g02231 1094 CDD STKc_IRAK 326 595 - -
Cme03g02231 1094 SUPERFAMILY Protein kinase-like (PK-like) 305 621 IPR011009 -
Cme03g02231 1094 ProSiteProfiles Protein kinase domain profile. 320 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g02231 1094 SUPERFAMILY Protein kinase-like (PK-like) 947 986 IPR011009 -
Cme03g02231 1094 Pfam Protein kinase domain 321 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g02231 1094 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 2 9 625 - -
Cme03g02231 1094 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 2 691 932 - -
Cme03g02231 1094 Pfam Salt stress response/antifungal 146 237 IPR002902 -
Cme03g02231 1094 Pfam Salt stress response/antifungal 828 921 IPR002902 -
Cme03g02231 1094 Pfam Salt stress response/antifungal 731 811 IPR002902 -
Cme03g02231 1094 Pfam Salt stress response/antifungal 45 128 IPR002902 -
Cme03g02231 1094 Gene3D Transferase(Phosphotransferase) domain 1 396 605 - -
Cme03g02231 1094 Gene3D Phosphorylase Kinase; domain 1 928 1015 - -
Cme03g02231 1094 Gene3D Phosphorylase Kinase; domain 1 280 395 - -
Cme03g02231 1094 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 2 983 1072 - -
Cme03g02231 1094 ProSiteProfiles Gnk2-homologous domain profile. 29 130 IPR002902 -
Cme03g02231 1094 ProSitePatterns Serine/Threonine protein kinases active-site signature. 441 453 IPR008271 GO:0004672|GO:0006468
Cme03g02231 1094 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 983 1072 - -
Cme03g02231 1094 Gene3D - 139 240 IPR038408 -
Cme03g02231 1094 Gene3D - 713 813 IPR038408 -
Cme03g02231 1094 Gene3D - 30 130 IPR038408 -
Cme03g02231 1094 Gene3D - 823 924 IPR038408 -
Cme03g02231 1094 ProSiteProfiles Gnk2-homologous domain profile. 817 924 IPR002902 -
Cme03g02231 1094 SMART serkin_6 320 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g02231 1094 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 2 930 982 - -
Cme03g02231 1094 ProSiteProfiles Gnk2-homologous domain profile. 135 240 IPR002902 -
Cme03g02231 1094 ProSiteProfiles Gnk2-homologous domain profile. 712 813 IPR002902 -
Cme03g02231 1094 ProSitePatterns Protein kinases ATP-binding region signature. 326 348 IPR017441 GO:0005524
Cme03g02231 1094 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 9 625 - -
Cme03g02231 1094 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 930 982 - -
Cme03g02231 1094 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 691 932 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02231 Cme-Chr3:29095583 Cme04g01865 Cme-Chr4:26366240 2.55E-06 dispersed
Cme08g01038 Cme-Chr8:6722425 Cme03g02231 Cme-Chr3:29095583 1.46E-17 transposed
Cme10g01751 Cme-Chr10:24865852 Cme03g02231 Cme-Chr3:29095583 6.89E-09 transposed
Cme10g00543 Cme-Chr10:3464745 Cme03g02231 Cme-Chr3:29095583 9.59E-08 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64776 PF00069 Pkinase 2.20E-48 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g02231 - - cmax:111492443 1634.0