Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g02234 ATGGCACCACATTTTCTGTTTTCCAAACCCCTTTTTCTTCTTTCCGCTCTCCTCCATCTTGCTTCTGCTACGCTATCTCCTTCTGGTGTTAACTTTGAAGTCGTAGCGTTGATGGCCATAAAATATGATTTATTAGATCCCCACAATGTTCTGGAGAACTGGGATTCTAATTCTGTGGATCCTTGCAGCTGGAGAATGGTCACCTGTTCTCCAGATGGATATGTTTCTGTTTTGGGGCTACCTAGCCAGAGTTTGTCCGGGGTCTTATCACCGGGGATTGGAAACCTCACCAAGTTGGAATCAGTGTTGCTTCAGAACAATGACATTTCAGGACCAATTCCTGCAACCATTGGAAAGTTAGAGAACCTCCAGACTCTTGATCTCTCCAACAATGTATTTAGTGGCCAAATACCCAGTTCCCTCGGAGACCTGAAGAAGCTGAACTATTTGCGACTGAATAACAACAGCCTAACTGGACCTTGTCCTGAATCTCTATCCAAAGTTGAAGGTCTCACGCTCGTGGACCTTTCATACAACAACTTGAGTGGCTCCTTACCCAAAATATCAGCAAGAACGTTCAAGATTGTTGGTAACCCTCTGATTTGTGGTCCAAACAACTGTTCTGCTATCTTTCCAGAGCCATTGTCGTTTGCCCCAGATGCTCTTGAAGAAAATTTGGGGTTTGGTAAGAGCCACCGCAAGGCAATTGCTTTCGGGGCAAGTTTTAGTGCTGCGTTTATTGTTTTAGTCCTTATTGGACTACTTGTCTGGTGGAGATACAGACACAACCAGCAGATTTTCTTTGATGTAAATGATCAATATGACCCAGAGGTACGTTTGGGTCATTTGAGAAGGTACACATTCAAGGAACTTCGGGCAGCAACTGATCACTTCAACTCTAAGAATATCTTGGGAAGAGGTGGGTTTGGAATTGTGTACAAGGGATGCTTAAATGATGGGACTCTGGTAGCGGTTAAAAGGCTGAAGGATTATAACACAGCTGGTGGGGAGATCCAATTTCAGACTGAAGTAGAGATGATAAGCCTAGCTGTACACCGAAATCTTCTCAAGCTTTTTGGCTTTTGTTCAACTGAGAGCGAAAGACTTCTGGTTTACCCTTTCATGCCCAACGGCAGCGTTGGATCTCGTCTAAGAGATCATATCCATGGGCAGCCGGCTCTAGATTGGGCAATGAGAAAGAGAATAGCCTTGGGCACAGCTAGGGGATTGGTATACTTACACGAGCAGTGTGACCCCAAAATTATTCATCGTGATGTCAAGGCCGCCAACATTCTCCTTGATGAAGACTTCGAGGCCGTCGTGGGAGACTTTGGGTTGGCCAAACTTTTGGATCACAGGGATTCTCATGTGACTACAGCCGTGCGTGGCACTGTTGGCCATATTGCCCCAGAATACTTATCAACGGGCCAATCGTCAGAAAAGACTGATGTTTTTGGGTTTGGAATCTTGCTTTTGGAGTTGATTACTGGTCAGAAGGCTCTGGATTTTGGTCGAGGAGCAAACCAGAAAGGCGTGATGCTCGATTGGGTAACTATTCTAGCGTGTTCTTTCTATAATGCATATGGCAATTATACTCGTCTTAATTCAACAAACTCAAGGGAAATATTGTTTATACAATTCATTCCACCATTTCAATGGATAAATCTAATCTTATGCACTAGAAACTTGCATCTTTGGCTTCTTGGCTCTTGTATTGTTTTGATTAAACAAAGCAATATATTTCTGGTGGAGTGGAATTCTTTATCTGGATCTTTCATTTTATTTTAA 1788 43.4 MAPHFLFSKPLFLLSALLHLASATLSPSGVNFEVVALMAIKYDLLDPHNVLENWDSNSVDPCSWRMVTCSPDGYVSVLGLPSQSLSGVLSPGIGNLTKLESVLLQNNDISGPIPATIGKLENLQTLDLSNNVFSGQIPSSLGDLKKLNYLRLNNNSLTGPCPESLSKVEGLTLVDLSYNNLSGSLPKISARTFKIVGNPLICGPNNCSAIFPEPLSFAPDALEENLGFGKSHRKAIAFGASFSAAFIVLVLIGLLVWWRYRHNQQIFFDVNDQYDPEVRLGHLRRYTFKELRAATDHFNSKNILGRGGFGIVYKGCLNDGTLVAVKRLKDYNTAGGEIQFQTEVEMISLAVHRNLLKLFGFCSTESERLLVYPFMPNGSVGSRLRDHIHGQPALDWAMRKRIALGTARGLVYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALDFGRGANQKGVMLDWVTILACSFYNAYGNYTRLNSTNSREILFIQFIPPFQWINLILCTRNLHLWLLGSCIVLIKQSNIFLVEWNSLSGSFILF 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29133232 29138077 - MELO3C010676.2.1 Cme03g02234 324245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g02234 595 SUPERFAMILY Protein kinase-like (PK-like) 274 511 IPR011009 -
Cme03g02234 595 ProSitePatterns Protein kinases ATP-binding region signature. 304 326 IPR017441 GO:0005524
Cme03g02234 595 SMART serkin_6 298 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g02234 595 Gene3D Ribonuclease Inhibitor 30 209 IPR032675 -
Cme03g02234 595 Gene3D Phosphorylase Kinase; domain 1 267 374 - -
Cme03g02234 595 Pfam Protein kinase domain 299 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g02234 595 Pfam Leucine rich repeat 98 157 IPR001611 GO:0005515
Cme03g02234 595 PANTHER PROTEIN NSP-INTERACTING KINASE 3 12 520 - -
Cme03g02234 595 ProSitePatterns Serine/Threonine protein kinases active-site signature. 421 433 IPR008271 GO:0004672|GO:0006468
Cme03g02234 595 ProSiteProfiles Protein kinase domain profile. 298 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g02234 595 SUPERFAMILY L domain-like 32 195 - -
Cme03g02234 595 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 12 520 - -
Cme03g02234 595 Pfam Leucine rich repeat N-terminal domain 33 70 IPR013210 -
Cme03g02234 595 Gene3D Transferase(Phosphotransferase) domain 1 375 536 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02234 Cme-Chr3:29133232 Cme10g00319 Cme-Chr10:2096713 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64777 PF00069 Pkinase 1.00E-41 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g02234 - - csv:101208885 978.778