Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00035 ATGGGAAAGCATGGACCTTGCTGTCACTGTGGAGTTACAAGCACTCCTCTTTGGCGTAATGGGCCTCCCGATAAACCGGTATTATGCAATGCATGTGGATCCCGTTGGAGAACAAAAGGAACACTTGCAAACTATACCCCTTTGCACGCTCGGGCTGATCCCGATGAATATGAAGACCACAAGGTTTCCAGGATGAAGAGCATTTCATTAAACAAAAACAAAGAAGTTAAACTGCTAAAAAGAAAGCTGCAACAAGCAGATGGATCAAGTGGATGGATGATTCCCGACCAAGGTCAGGGTTATCATAGAGTAGTGGATGAAGATACAAGCAATAGATCCAGTTCAGGATCGGCCATATCTAATCCTGAGAGTTGTGCCCATTTCAGCAGTGCGGATGCTAGTGATTTGACAGGTCCAGCTCAGTCAATAGTTTGGGAGTCCATGGTGCCTTCCAGGAAGCGGACCTGTGTGAATCGACCAAAGCAGTCCCCGGTTGAAAAACTAACTAAAGATCTGTATAGTATCTTACGTGAGCAGAGATCTTCCTATTTCTCCGAAGCTTCTGAAGATGATTTGCTTTTTGAGAGTGAAAAACCTATGGTCTCTGTTGAGATAGGTCATGGAAGTATTCTCATTAGGCATCCAAGTTCGATAGCACGAGAAGAGGAATCTGAAGCTAGCTCAATTTCAGTTGATAACAAGCAATGCTTGGTAAATGAGGTCTATTCACCCCATTCTACAACTGTTCTTGTGTGTAGTGAAAACAAAGGTATAAATTTCCCAACATCTAGGATCGGAAAGATGAAGAATCCTTATGGATCAGGAGTACAACAAGAACAAATTAAAAGGAACGACTCTCATCACGAATGCTTACAAATTCTTGCAAACCATAACTCGCCCTTATGTGATGTAGATTTAAATGACATTATAAACTACGAAGAGTTTGCAAGACAACTAACAAATGAAGAACAACAGCAATTAATGAAGTACCTACCACAGATTGATATCGCTGAATTTCCCGATACCCTCAAGAGCATGTTTGATAGCCCCTATTTCAAGGAGAACTTAACTTCCTTCCAACAACTACTTAGCGAGGGCATTTTCGATGTTTCCTTCCTTGGAACAAAGGTCGAAGACTGCAAAACCTTGAAAAGGCTTGTCTTGTATAATTCTTCAAAATCCAAGTGGGTTGAACGCTATCATCAACTGAAGAAATGTAAAAATGGTAGCAAAGGACCTTTTCTTTCCCATGCCAATGCGTCGGTGTCGAGTAACTTCACTAATGTTAAGCAATTGTGTGAGAGCTACAATCAAAATATTCCAGAGGCAAAGACCATCTTGAAGAGTCCCAAAAGGTTGGTGATGAAGGAAAATAAGGATCCTGGAGAGAATGATGGATCATGCTTCAGTCCTAGAAGTTTATTTGCTTTGCCTCCTGATGGAAGCTCCCTCATGCTTGAATCCTTACATTTCGTCGAAGAAAGTTCAGATCAAGATCTATTGCTTGATGTACGGTCAAATAGTTCATTCCCGCAAGCTGAGCTTCTTCACCCAACCTCTCGTTCGGGTGGTAGGCAGGCCAGCACATGTAGTAGCTCAGTTCACCCACATCTTGTTCATCACTAA 1626 42.07 MGKHGPCCHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPDEYEDHKVSRMKSISLNKNKEVKLLKRKLQQADGSSGWMIPDQGQGYHRVVDEDTSNRSSSGSAISNPESCAHFSSADASDLTGPAQSIVWESMVPSRKRTCVNRPKQSPVEKLTKDLYSILREQRSSYFSEASEDDLLFESEKPMVSVEIGHGSILIRHPSSIAREEESEASSISVDNKQCLVNEVYSPHSTTVLVCSENKGINFPTSRIGKMKNPYGSGVQQEQIKRNDSHHECLQILANHNSPLCDVDLNDIINYEEFARQLTNEEQQQLMKYLPQIDIAEFPDTLKSMFDSPYFKENLTSFQQLLSEGIFDVSFLGTKVEDCKTLKRLVLYNSSKSKWVERYHQLKKCKNGSKGPFLSHANASVSSNFTNVKQLCESYNQNIPEAKTILKSPKRLVMKENKDPGENDGSCFSPRSLFALPPDGSSLMLESLHFVEESSDQDLLLDVRSNSSFPQAELLHPTSRSGGRQASTCSSSVHPHLVHH 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 218657 225048 + MELO3C003335.2.1 Cme04g00035 324296

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00035 541 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 297 409 IPR044867 -
Cme04g00035 541 MobiDBLite consensus disorder prediction 110 132 - -
Cme04g00035 541 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 45 - -
Cme04g00035 541 MobiDBLite consensus disorder prediction 107 132 - -
Cme04g00035 541 CDD ZnF_GATA 6 51 IPR000679 GO:0006355|GO:0043565
Cme04g00035 541 Pfam Asx homology domain 285 369 IPR028020 -
Cme04g00035 541 MobiDBLite consensus disorder prediction 516 541 - -
Cme04g00035 541 PANTHER GATA TRANSCRIPTION FACTOR 26 1 541 - -
Cme04g00035 541 Gene3D - 4 85 IPR013088 GO:0006355|GO:0008270
Cme04g00035 541 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Cme04g00035 541 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Cme04g00035 541 PANTHER OSJNBB0038F03.10 PROTEIN 1 541 IPR044589 -
Cme04g00035 541 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Cme04g00035 541 MobiDBLite consensus disorder prediction 516 535 - -
Cme04g00035 541 Gene3D - 292 386 IPR038108 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00035 - - - csv:101215311 1072.38
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00035 Cme-Chr4:218657 Cme07g01697 Cme-Chr7:22530241 8.83E-08 dispersed
Cme01g02738 Cme-Chr1:34565087 Cme04g00035 Cme-Chr4:218657 1.14E-06 transposed
Cme04g00035 Cme-Chr4:218657 Cme06g02531 Cme-Chr6:32338959 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme03g01757 CCT,ECH 92 365 C2C2-Gata Transcription Factor Family AT5G25830 52.3 3.4e-70 262.3
Cme07g01697 . 83 365 C2C2-Gata Transcription Factor Family AT5G66320 52.2 7.4e-65 244.6
Cme08g00904 . 104 262 C2C2-Gata Transcription Factor Family AT4G36240 52.3 5.8e-40 161.4
Cme03g01757 CCT,ECH 116 365 C2C2-Gata Transcription Factor Family AT4G32890 52.6 6.5e-60 228.0
Cme04g00035 . 1 517 C2C2-Gata Transcription Factor Family AT4G17570 51.7 3.0e-134 475.7
Cme06g02531 . 40 541 C2C2-Gata Transcription Factor Family AT4G17570 53.0 8.4e-129 457.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001256 2 2 1 2 3 2 5 2 2 2 2 2 4 2 1 4 2 3 4 2 2 2 2 2 2 2 2 7 3 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41118 PF13919 ASXH 8.80E-10 No_clan Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00035 Cme_Chr04 FPKM 1.622988 0.0 4.660384 5.260999 5.74124 7.354304 6.99975 0.0 0.0 0.0