Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00035 ATGGGAAAGCATGGACCTTGCTGTCACTGTGGAGTTACAAGCACTCCTCTTTGGCGTAATGGGCCTCCCGATAAACCGGTATTATGCAATGCATGTGGATCCCGTTGGAGAACAAAAGGAACACTTGCAAACTATACCCCTTTGCACGCTCGGGCTGATCCCGATGAATATGAAGACCACAAGGTTTCCAGGATGAAGAGCATTTCATTAAACAAAAACAAAGAAGTTAAACTGCTAAAAAGAAAGCTGCAACAAGCAGATGGATCAAGTGGATGGATGATTCCCGACCAAGGTCAGGGTTATCATAGAGTAGTGGATGAAGATACAAGCAATAGATCCAGTTCAGGATCGGCCATATCTAATCCTGAGAGTTGTGCCCATTTCAGCAGTGCGGATGCTAGTGATTTGACAGGTCCAGCTCAGTCAATAGTTTGGGAGTCCATGGTGCCTTCCAGGAAGCGGACCTGTGTGAATCGACCAAAGCAGTCCCCGGTTGAAAAACTAACTAAAGATCTGTATAGTATCTTACGTGAGCAGAGATCTTCCTATTTCTCCGAAGCTTCTGAAGATGATTTGCTTTTTGAGAGTGAAAAACCTATGGTCTCTGTTGAGATAGGTCATGGAAGTATTCTCATTAGGCATCCAAGTTCGATAGCACGAGAAGAGGAATCTGAAGCTAGCTCAATTTCAGTTGATAACAAGCAATGCTTGGTAAATGAGGTCTATTCACCCCATTCTACAACTGTTCTTGTGTGTAGTGAAAACAAAGGTATAAATTTCCCAACATCTAGGATCGGAAAGATGAAGAATCCTTATGGATCAGGAGTACAACAAGAACAAATTAAAAGGAACGACTCTCATCACGAATGCTTACAAATTCTTGCAAACCATAACTCGCCCTTATGTGATGTAGATTTAAATGACATTATAAACTACGAAGAGTTTGCAAGACAACTAACAAATGAAGAACAACAGCAATTAATGAAGTACCTACCACAGATTGATATCGCTGAATTTCCCGATACCCTCAAGAGCATGTTTGATAGCCCCTATTTCAAGGAGAACTTAACTTCCTTCCAACAACTACTTAGCGAGGGCATTTTCGATGTTTCCTTCCTTGGAACAAAGGTCGAAGACTGCAAAACCTTGAAAAGGCTTGTCTTGTATAATTCTTCAAAATCCAAGTGGGTTGAACGCTATCATCAACTGAAGAAATGTAAAAATGGTAGCAAAGGACCTTTTCTTTCCCATGCCAATGCGTCGGTGTCGAGTAACTTCACTAATGTTAAGCAATTGTGTGAGAGCTACAATCAAAATATTCCAGAGGCAAAGACCATCTTGAAGAGTCCCAAAAGGTTGGTGATGAAGGAAAATAAGGATCCTGGAGAGAATGATGGATCATGCTTCAGTCCTAGAAGTTTATTTGCTTTGCCTCCTGATGGAAGCTCCCTCATGCTTGAATCCTTACATTTCGTCGAAGAAAGTTCAGATCAAGATCTATTGCTTGATGTACGGTCAAATAGTTCATTCCCGCAAGCTGAGCTTCTTCACCCAACCTCTCGTTCGGGTGGTAGGCAGGCCAGCACATGTAGTAGCTCAGTTCACCCACATCTTGTTCATCACTAA 1626 42.07 MGKHGPCCHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPDEYEDHKVSRMKSISLNKNKEVKLLKRKLQQADGSSGWMIPDQGQGYHRVVDEDTSNRSSSGSAISNPESCAHFSSADASDLTGPAQSIVWESMVPSRKRTCVNRPKQSPVEKLTKDLYSILREQRSSYFSEASEDDLLFESEKPMVSVEIGHGSILIRHPSSIAREEESEASSISVDNKQCLVNEVYSPHSTTVLVCSENKGINFPTSRIGKMKNPYGSGVQQEQIKRNDSHHECLQILANHNSPLCDVDLNDIINYEEFARQLTNEEQQQLMKYLPQIDIAEFPDTLKSMFDSPYFKENLTSFQQLLSEGIFDVSFLGTKVEDCKTLKRLVLYNSSKSKWVERYHQLKKCKNGSKGPFLSHANASVSSNFTNVKQLCESYNQNIPEAKTILKSPKRLVMKENKDPGENDGSCFSPRSLFALPPDGSSLMLESLHFVEESSDQDLLLDVRSNSSFPQAELLHPTSRSGGRQASTCSSSVHPHLVHH 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 218657 225048 + MELO3C003335.2.1 Cme04g00035 324296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00035 541 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 297 409 IPR044867 -
Cme04g00035 541 MobiDBLite consensus disorder prediction 110 132 - -
Cme04g00035 541 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 45 - -
Cme04g00035 541 MobiDBLite consensus disorder prediction 107 132 - -
Cme04g00035 541 CDD ZnF_GATA 6 51 IPR000679 GO:0006355|GO:0043565
Cme04g00035 541 Pfam Asx homology domain 285 369 IPR028020 -
Cme04g00035 541 MobiDBLite consensus disorder prediction 516 541 - -
Cme04g00035 541 PANTHER GATA TRANSCRIPTION FACTOR 26 1 541 - -
Cme04g00035 541 Gene3D - 4 85 IPR013088 GO:0006355|GO:0008270
Cme04g00035 541 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Cme04g00035 541 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Cme04g00035 541 PANTHER OSJNBB0038F03.10 PROTEIN 1 541 IPR044589 -
Cme04g00035 541 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Cme04g00035 541 MobiDBLite consensus disorder prediction 516 535 - -
Cme04g00035 541 Gene3D - 292 386 IPR038108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00035 Cme-Chr4:218657 Cme07g01697 Cme-Chr7:22530241 8.83E-08 dispersed
Cme01g02738 Cme-Chr1:34565087 Cme04g00035 Cme-Chr4:218657 1.14E-06 transposed
Cme04g00035 Cme-Chr4:218657 Cme06g02531 Cme-Chr6:32338959 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41118 PF13919 ASXH 8.80E-10 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00035 - - csv:101215311 1072.38