Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00036 ATGGAGGGTTCGAATAAATGTGGGTTTTTGGAGTACCTATTCTTATTGCTTGTGCTCTTGCCTGTTATGTGCTATTCTCAAGACAATTTTGTTTACTCTAGAGCCACCTATTATGGCAGCCCTGATTGCTATGGAACACCATCTGGGGCTTGTGGATTTGGTGAATTTGGAAGGACAGTGAATGATGGCAATGTTGCTGCAGTTTCATATCTTTATAGGAATGGTTCTGGTTGTGGTGCATGTTATCAGGTTAGGTGCACAAATCCAAAATATTGTAGTGGAAGTGGAGCAATTGTGGTGGTGACAGACCATGGTGAAGGGGATTACACTGACTTTATATTAAGCCCAAGAGCCTATGCAAAAATGGCTCATCCAAACACAGCCTTACAATTATTTTCATACGGTGTTGTTGATGTTGAATTCAGAAGGGTTTCTTGCCAATACCCATATTACAATACTCTCAAATTTAAGGTTCATGAGCATAGCAGATTCCCTGACTATTTGGCCATTCTTATCATTTATGTTGCTGGCAAAAATGACATCACTGCTGTTGAATTGTGGCAGGAGGATTGCAATGAATGGAAAGGAATGAGGAGATCCCATGGAGCTGTTTGGGATATGGCAAATCCTCCTAAAGATAACATAAAATTGAGGTTTCAAGTGAGTGGAAGTATGGGATATGGAAATTGGATTGTTGCAAACAATGCTCTCCCAAGTTATTGGAAGCCAGGAGTTGCTTATGACACTGATATTAACCTCTATTAA 765 40.13 MEGSNKCGFLEYLFLLLVLLPVMCYSQDNFVYSRATYYGSPDCYGTPSGACGFGEFGRTVNDGNVAAVSYLYRNGSGCGACYQVRCTNPKYCSGSGAIVVVTDHGEGDYTDFILSPRAYAKMAHPNTALQLFSYGVVDVEFRRVSCQYPYYNTLKFKVHEHSRFPDYLAILIIYVAGKNDITAVELWQEDCNEWKGMRRSHGAVWDMANPPKDNIKLRFQVSGSMGYGNWIVANNALPSYWKPGVAYDTDINLY 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 229892 231947 - MELO3C003336.2.1 Cme04g00036 324297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00036 254 Pfam Expansin C-terminal domain 155 238 IPR007117 -
Cme04g00036 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 151 IPR007112 -
Cme04g00036 254 SUPERFAMILY PHL pollen allergen 153 248 IPR036749 -
Cme04g00036 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 249 IPR007117 -
Cme04g00036 254 Gene3D - 150 254 IPR036749 -
Cme04g00036 254 Pfam Lytic transglycolase 68 140 IPR009009 -
Cme04g00036 254 SUPERFAMILY Barwin-like endoglucanases 15 149 IPR036908 -
Cme04g00036 254 PANTHER EXPANSIN-B3 12 253 - -
Cme04g00036 254 Gene3D - 22 147 IPR036908 -
Cme04g00036 254 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Cme04g00036 254 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Cme04g00036 254 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Cme04g00036 254 PRINTS Expansin/Lol pI family signature 194 208 IPR007118 GO:0005576
Cme04g00036 254 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576
Cme04g00036 254 PANTHER EXPANSIN-LIKE B1 12 253 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00036 Cme-Chr4:229892 Cme04g00065 Cme-Chr4:498019 8.88E-69 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00036 - - csv:101215548 521.161