Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00043 TGGAAACAGAGCGCGAATTTGTATTCTAGGGTTTTTCTGGTTTCCAATTTCACCAAATCTTCTTTCGGAGATCTTGTGGTCAGTCAAGCAGCAATGACGAAGAGAACCAAGAAGGCAGGCATTGTTGGAAAATATGGTACCCGATATGGTGCCAGTCTGAGAAAACAGATCAAGAAGATGGAAGTCAGTCAGCACAGTAAATACTTCTGTGAGTTCTGTGGAAAGTATGCAGTTAAGAGGAAGGCAGTTGGAATTTGGGGTTGTAAAGATTGTGGTAAAGTGAAAGCTGGTGGTGCCTACACTCTCAAGTACTAA 315 42.54 WKQSANLYSRVFLVSNFTKSSFGDLVVSQAAMTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLKY 104
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 282628 284869 - MELO3C003342.2.1 Cme04g00043 324304

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00043 104 SUPERFAMILY Zn-binding ribosomal proteins 41 102 IPR011332 GO:0006412
Cme04g00043 104 PANTHER 60S RIBOSOMAL PROTEIN L37A-2 26 103 - -
Cme04g00043 104 Hamap 50S ribosomal protein L37Ae [rpl37ae]. 35 103 IPR002674 GO:0003735|GO:0005840|GO:0006412
Cme04g00043 104 Pfam Ribosomal L37ae protein family 35 102 IPR002674 GO:0003735|GO:0005840|GO:0006412
Cme04g00043 104 Gene3D - 32 104 IPR011331 GO:0003735|GO:0005840|GO:0006412
Cme04g00043 104 PANTHER ZGC:171772 26 103 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00043 K02921 RP-L37Ae, RPL37A; large subunit ribosomal protein L37Ae - lsv:111898551 164.081
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00812 Cme-Chr5:10424249 Cme04g00043 Cme-Chr4:282628 3.19E-47 transposed
Cme04g00043 Cme-Chr4:282628 Cme06g00352 Cme-Chr6:2181486 2.10E-47 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g572 . . . . . . . Bma14g00061 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00034 . . . . . . Bpe11g00293 . . . . Cmo19g00396 . . . . . . Bhi05g00568 Tan07g1907 . Lac11g2349 Hepe06g1723 . Lcy12g1883 Cla09g01201 Cam09g1269 Cec09g1283 . . . Cre09g1229 . . . Cme04g00043
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001112 1 3 2 3 3 2 4 1 2 3 3 2 4 3 3 3 2 4 4 1 2 3 2 3 2 2 3 4 4 2 80
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00043 Cme_Chr04 FPKM 6.453125 13.287584 10.977458 9.63172 8.998638 7.4815 12.622048 26.10128 28.423906 29.645676