Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00046 ATGGGTTGTTTCTTCAATTTACATCGCAAAACCAAGATTAAGAGAGGGGGAGATTCGGTGAAGGAGCTTAATCGAAGTAATAAAGCGGATCGTAAACCTACCAATCGAGGGATTGAAGCACTGGAAACTTTGCCTACGCCCCGGAGTATACCTGAGTTGTACAAAGAAAAAGAGCATACTCTGAGAGTTTTCACTTTTGAAGAGCTCAAAATTGCGACTAATGGGTTCAGCAGGTTGCTTAGGATTGGAGAAGGTGGATTTGGGAGCGTATATAGGGGGCAGATTAGGCTTGAAGGTGATCAGGGAGAGGAAATTATAGTTGCTATCAAGCGACTTAAGTCAAATAGCTCACAGGGTCACAAACAATGGCTTGCAGAAGTTCAATTTCTTGGTGTTGTTAGTCATCCAAATCTGGTAAAACTTTTGGGATATTGTTCAGAAGATGGAGAAAGAGGGATCCAACGACTGTTGGTCTATGAATTCATGTCTAATGGAAGCTTAGAAGATCATCTCTTTAGCAGGAGTAGGACTCTTTTGACTTGGAAAACTAGGCTACAGATTATCCTTGGTGCAGCTCAAGGATTAGCTTATTTACATGAAGGATTAGAAGTCCAGGTGATTTATCGCGACTTCAAATCATCAAATGTACTATTGGATGAAGAATTCTCTCCTAAACTTTCGGATTTTGGGCTTGCTAGAGAAGGACCAACTGGTGATCACACACATGTGTCCACTGCAGTGGTTGGGACATATGGATATGCAGCACCTGAGTATGTCGTCACAGGACATCTAACAATTCAAAGTGACATATGGAGTTTTGGAGTAGTGTTGTATGAGATCCTAACAGGCAGGCGAACTCTTGAAAGAAACCGCCCAACTGGAGAGCAAAAGCTACTGGAGTGGGTGAAACAATTTCCTATAAATAGTAAAAGTTTCAAGACGATAATAGATCCTCGGCTTCAAAATCAGTATAACCTGGCAGCAGCTCGAAAAATTGCCAATTTAGCCAGTCAATGTCTCAACAAGACTGCAAAAGATCGACCAACAATGTCGAAGGTCGTTGAAATCCTGAAGCAAGCACTAGAAGAGTCAGAGAAGAATGTTCAGTTATGA 1113 41.69 MGCFFNLHRKTKIKRGGDSVKELNRSNKADRKPTNRGIEALETLPTPRSIPELYKEKEHTLRVFTFEELKIATNGFSRLLRIGEGGFGSVYRGQIRLEGDQGEEIIVAIKRLKSNSSQGHKQWLAEVQFLGVVSHPNLVKLLGYCSEDGERGIQRLLVYEFMSNGSLEDHLFSRSRTLLTWKTRLQIILGAAQGLAYLHEGLEVQVIYRDFKSSNVLLDEEFSPKLSDFGLAREGPTGDHTHVSTAVVGTYGYAAPEYVVTGHLTIQSDIWSFGVVLYEILTGRRTLERNRPTGEQKLLEWVKQFPINSKSFKTIIDPRLQNQYNLAAARKIANLASQCLNKTAKDRPTMSKVVEILKQALEESEKNVQL 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 311634 314120 + MELO3C003345.2.1 Cme04g00046 324307

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00046 370 ProSiteProfiles Protein kinase domain profile. 76 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g00046 370 Pfam Protein tyrosine and serine/threonine kinase 81 357 IPR001245 GO:0004672|GO:0006468
Cme04g00046 370 CDD STKc_IRAK 82 359 - -
Cme04g00046 370 PANTHER OS01G0588500 PROTEIN-RELATED 21 364 - -
Cme04g00046 370 ProSitePatterns Protein kinases ATP-binding region signature. 82 110 IPR017441 GO:0005524
Cme04g00046 370 Gene3D Phosphorylase Kinase; domain 1 55 161 - -
Cme04g00046 370 SUPERFAMILY Protein kinase-like (PK-like) 58 357 IPR011009 -
Cme04g00046 370 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL20-RELATED 21 364 - -
Cme04g00046 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Cme04g00046 370 Gene3D Transferase(Phosphotransferase) domain 1 162 369 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00046 - - K00924 csv:101212662 706.442
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme04g00046 Cme06g02513 CCT
Cme04g00046 Cme06g02513 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00046 Cme-Chr4:311634 Cme10g00446 Cme-Chr10:2831318 1.34E-117 dispersed
Cme03g01259 Cme-Chr3:22202663 Cme04g00046 Cme-Chr4:311634 2.46E-131 transposed
Cme05g01646 Cme-Chr5:25611741 Cme04g00046 Cme-Chr4:311634 1.39E-78 transposed
Cme08g00966 Cme-Chr8:6347761 Cme04g00046 Cme-Chr4:311634 1.17E-63 transposed
Cme08g01293 Cme-Chr8:9366802 Cme04g00046 Cme-Chr4:311634 1.35E-127 transposed
Cme04g00046 Cme-Chr4:311634 Cme06g02513 Cme-Chr6:32176348 3.56E-175 wgd
Cme04g00046 Cme-Chr4:311634 Cme06g00345 Cme-Chr6:2134537 6.20E-169 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g575 . . Bda06g01304 . . . . . Cmo06g00851 . Cma02g01580 . Car02g01344 . . . Cpe05g00210 Bhi11g00096 . . . . Mch10g1609 . Cla10g00201 . . . . . . Cone8ag0440 Cone12ag0425 Cone6ag0626 Cone9ag0627 Lsi07g01242 . Chy04g00037 Cme06g02513 Blo03g00818 . Bda07g00128 Bda09g00691 Bpe08g00866 Bpe11g00359 . . . Cmo02g01622 Cmo19g00393 Cma06g00828 Cma16g01095 . Car16g01036 Cpe08g00701 . Bhi05g00563 . . . . . Lcy12g1885 Cla09g01197 . . . . . . . Csa03g04665 Chy06g02104 Cme04g00046
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001810 3 2 1 0 2 0 4 0 0 2 2 0 4 2 0 4 0 0 4 0 2 0 0 0 0 2 0 0 0 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64778 PF07714 PK_Tyr_Ser-Thr 2.60E-51 CL0016 Cme PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00046 Cme_Chr04 FPKM 1.925839 1.161357 0.13564 0.371167 18.570251 20.498363 17.128937 0.091036 0.038801 0.027253