Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00063 ATGGCTCCCACCTCAGCTCTGGCGAAGTATAAGCTCGTCTTTCTCGGTGACCAGTCTGTTGGCAAAACCAGCATCATTACACGCTTCATGTACGACAAATTCGATAATACATATCAGGCTACCATTGGTATTGATTTTCTCTCAAAAACCATGTATCTGGAAGATCGTACCGTTCGACTGCAGTTGTGGGACACTGCTGGACAGGAAAGATTCAGAAGTTTAATACCAAGCTATATCAGGGACTCATCTGTAGCTGTCATCGTTTATGATGTTGCAAGCCGGCAAACTTTCCTAAACACTTCAAAGTGGATTGAGGAGGTGCGCACTGAGAGAGGCAGTGATGTCATTATAGTGCTTGTTGGGAACAAAACGGACCTTGTGGAGAAGAGGCAAGTCTCCATAGAGGAAGGAGAAGCCAAAGCCCGTGAACTAAATGTCATGTTTATCGAAACAAGTGCTAAAGCTGGATTCAATATCAAGGCACTTTTCCGAAAAATTGCTGCAGCATTGCCGGGAATGGAAACTCTGTCGTCAACAAAACAAGAAGACATGGTCGATGTTAACTTGAAGTCCACAGGAAGTGGTGCCGCACAATCCCAGCCGCAGTCGAGCGGATGCGCGTGCTAA 627 45.93 MAPTSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTSKWIEEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDMVDVNLKSTGSGAAQSQPQSSGCAC 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 480041 485466 + MELO3C003369.2.1 Cme04g00063 324324

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00063 208 ProSiteProfiles small GTPase Rab1 family profile. 2 208 - -
Cme04g00063 208 SMART ras_sub_4 7 173 - -
Cme04g00063 208 SMART rho_sub_3 12 172 IPR001806 GO:0003924|GO:0005525
Cme04g00063 208 CDD Rab6 10 170 - -
Cme04g00063 208 PANTHER DRAB5-RELATED 1 208 - -
Cme04g00063 208 ProSiteProfiles small GTPase Rho family profile. 3 176 - -
Cme04g00063 208 SMART rab_sub_5 10 173 - -
Cme04g00063 208 SMART ran_sub_2 15 208 - -
Cme04g00063 208 Pfam Ras family 11 169 IPR001806 GO:0003924|GO:0005525
Cme04g00063 208 PRINTS Transforming protein P21 ras signature 10 31 - -
Cme04g00063 208 PRINTS Transforming protein P21 ras signature 33 49 - -
Cme04g00063 208 PRINTS Transforming protein P21 ras signature 51 73 - -
Cme04g00063 208 PRINTS Transforming protein P21 ras signature 113 126 - -
Cme04g00063 208 PRINTS Transforming protein P21 ras signature 148 170 - -
Cme04g00063 208 ProSiteProfiles small GTPase Ras family profile. 5 208 IPR001806 GO:0003924|GO:0005525
Cme04g00063 208 Gene3D - 5 203 IPR027417 -
Cme04g00063 208 PANTHER GTP-BINDING PROTEIN RAB6 1 208 - -
Cme04g00063 208 TIGRFAM small_GTP: small GTP-binding protein domain 9 166 IPR005225 GO:0005525
Cme04g00063 208 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 182 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00063 K07893 RAB6A; Ras-related protein Rab-6A - csv:101204395 366.696
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01644 Cme-Chr3:25254390 Cme04g00063 Cme-Chr4:480041 6.16E-27 dispersed
Cme04g00063 Cme-Chr4:480041 Cme08g00766 Cme-Chr8:5128762 4.33E-134 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g618 . . . . . . . . . . Cma02g01585 . Car02g01349 . . . . . . . . . . . . . . . . . . Cone8ag0448 Cone12ag0437 . . . . Chy04g00049 . . . . . . . . . . Cmo02g01628 . . . . . . . . . . . . . . Cla09g01177 Cam09g1242 Cec09g1258 . . . Cre09g1206 . Csa03g04651 . Cme04g00063
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001834 3 2 2 3 3 1 4 2 1 1 1 1 1 2 2 4 1 5 3 2 2 2 2 2 2 1 2 4 3 2 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00063 Cme_Chr04 FPKM 0.0 0.0 0.254351 0.17226 38.624302 41.082981 38.260063 0.0 0.0 0.241076