Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00064 TTCTTCAACGTTTTCTCGTTCTTCATTCTCATCCTACACGCTTTCTTTTCCCTCATTTTCTCTCATGCTGCCATTTCAACTTCTTCTTCTTCTACTTCTCTAGTACATAACGCTCAATTTGGCGCAATGGCTGCCATGGAGTCCTTGATCGCCCTTGTTAACCGTATTCAGAGAGCTTGTACTGTTCTTGGTGATTACGGCGGTGAGTACTCTGCTTTGCCTACTATTTGGGAGACTCTTCCGTCTGTTGTTGTCGTCGGCGGTCAGAGCTCTGGAAAATCATCGGTGTTGGAGAGCATTGTTGGTCGTGATTTTCTTCCCAGGGGATCAGGAATTGTTACGCGGAGGCCTCTAGTTTTGCAGCTCCAGAAGGTTGAACCAGGAAGAGAGGAGTATGCAGAATTTCTTCATCTGCCTAAGAAAAAATTTACTGATTTCTCGTTGGTTAGGAAGGAAATAGAAGATGAAACTGATAGCTTGACTGGGAGGTTAAAACAAATTTCTCCTGTTCCAATTCATCTCAGTATCTACTCTCCAAATGTGGTCAATTTGACACTCATAGATTTGCCTGGTTTAACAAAGGTTGCTGTAGAAGGACAGCCTGACAGCATCGTTCAAGATATTGAATCAATGGTCCGGACTTATATCGAGCAGCAAAACTGCATAATTTTGGCCATAACTCCGGCTAATCAAGATATTGCAACATCTGATGCTATTAAGCTTTCTCGAGAGGTTGATTCCACAGGTGAAAGGACATTTGGGGTATTGACAAAGCTTGATTTGATGGATAATGGAACAAATGCTTTGGAGGTTCTTGATGGAAGGTCCTATCGGCTTCAACACCCTTGGGTTGGAGTTGTCAACCGTTCTCAAGCTGATATCAATAAGAATATTGATATGATTACCGCTCGACGAAGGGAACGTGAATTCTTTGCTTCTAGTGTTGACTACAAACACTTGGCTGGTACAATGGGGTCAGAGTATCTGGCGAAACTCCTGTCAAAGCACCTAGAGTCTCAGATAAAGACATGTATGCCTGGCATTGCATCGTTAATTAACAAAAGCATTGATGAAATTGAAGCAGAGCTTGATCAACTTGGGAAGCCTGTTTCTGTGGACTCTGGGGCTCAATTGTATACCATCCTAGAGCTTTGCCGTGCATTTGACCTGGTGTTCAAGGAGCATCTCCATGGGGGACGACCTGGTGGTGACCGGATATATAGTGTTTTTGATAATCAGCTTCCTCATGCTTTGAGAAAGCTTCCTTTTGATCGGTATCTCTCACTGCAAAATGTGAGAAAAGTAATATCGGAGGCCGATGGATACCAACCCCATCTGATTGCACCTGAGCATGGGTATCGGCGCCTTATTGAAGGAGCAGTTAATTATTTTAGACGTCCGGCTGAAGCTTCAGTTGATGCTGTTCATTTCATTTTGAAGGAACTCGTTAGAAGATCAATGGCAGAAACTCAGGAGCTGAAGCGCTTTCCCACTCTCCAAGCTGAAGTTTCAAGAGCTGCAAACGAAGCGTTAGAGAGATTTCGAGAAGATAGCAAAAAGACAACCTTGCGTTTGGTTGACATGGAATCCTCCTACCTAACAGTAGACTTCTTTCGAAAGCTCCAACAGGAAGATGAAAAGGGAGGAACCCCACCATCTACAGCTACCACAGACCGGTACACTGAGGCGCATTTTCACCGGATAGCATTAAATATTTCTTCATATATCAGGATGGTGTCTGAGACTCTGAGGAACACCATTCCAAAGTCTGTTGTTCATTGTCAAGTTAGGGAAGCAAAGCGATCTATATTAGATTACTTTTATGTGCAATTGGGACAAATGGAGGGCAATCAACTTGCAGCTCTTCTGGGTGAAGATCCTGAATTGATTGAAAGGAGAAAGCAATGTGTCAAAAGGCTTGAACTACATAAATCAGCAAGGAATGAGATTGACTCAGTCTCATGGTTCTGA 1971 43.33 FFNVFSFFILILHAFFSLIFSHAAISTSSSSTSLVHNAQFGAMAAMESLIALVNRIQRACTVLGDYGGEYSALPTIWETLPSVVVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLQKVEPGREEYAEFLHLPKKKFTDFSLVRKEIEDETDSLTGRLKQISPVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIESMVRTYIEQQNCIILAITPANQDIATSDAIKLSREVDSTGERTFGVLTKLDLMDNGTNALEVLDGRSYRLQHPWVGVVNRSQADINKNIDMITARRREREFFASSVDYKHLAGTMGSEYLAKLLSKHLESQIKTCMPGIASLINKSIDEIEAELDQLGKPVSVDSGAQLYTILELCRAFDLVFKEHLHGGRPGGDRIYSVFDNQLPHALRKLPFDRYLSLQNVRKVISEADGYQPHLIAPEHGYRRLIEGAVNYFRRPAEASVDAVHFILKELVRRSMAETQELKRFPTLQAEVSRAANEALERFREDSKKTTLRLVDMESSYLTVDFFRKLQQEDEKGGTPPSTATTDRYTEAHFHRIALNISSYIRMVSETLRNTIPKSVVHCQVREAKRSILDYFYVQLGQMEGNQLAALLGEDPELIERRKQCVKRLELHKSARNEIDSVSWF 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 487513 496783 + MELO3C003370.2.1 Cme04g00064 324325

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00064 656 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 106 115 IPR019762 -
Cme04g00064 656 PANTHER DYNAMIN 45 655 IPR022812 -
Cme04g00064 656 Pfam Dynamin central region 267 542 IPR000375 -
Cme04g00064 656 Pfam Dynamin GTPase effector domain 561 653 IPR003130 GO:0003924|GO:0005525
Cme04g00064 656 Gene3D Dynamin, middle domain 384 633 - -
Cme04g00064 656 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 77 346 IPR030381 GO:0005525
Cme04g00064 656 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 75 354 IPR027417 -
Cme04g00064 656 Pfam Dynamin family 83 258 IPR045063 -
Cme04g00064 656 PRINTS Dynamin signature 80 98 IPR022812 -
Cme04g00064 656 PRINTS Dynamin signature 270 289 IPR022812 -
Cme04g00064 656 PRINTS Dynamin signature 105 122 IPR022812 -
Cme04g00064 656 PRINTS Dynamin signature 178 195 IPR022812 -
Cme04g00064 656 PRINTS Dynamin signature 228 246 IPR022812 -
Cme04g00064 656 PRINTS Dynamin signature 247 263 IPR022812 -
Cme04g00064 656 Gene3D - 46 383 IPR027417 -
Cme04g00064 656 PANTHER DYNAMIN-LIKE PROTEIN 1E 45 655 - -
Cme04g00064 656 SMART GED_2 560 653 IPR003130 GO:0003924|GO:0005525
Cme04g00064 656 SMART dynamin_3 46 297 IPR001401 GO:0003924|GO:0005525
Cme04g00064 656 CDD DLP_1 79 346 IPR001401 GO:0003924|GO:0005525
Cme04g00064 656 ProSiteProfiles GED domain profile. 565 656 IPR020850 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00064 - - - csv:101208260 1197.19
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00064 Cme-Chr4:487513 Cme09g01318 Cme-Chr9:18263033 0 dispersed
Cme01g00286 Cme-Chr1:2146175 Cme04g00064 Cme-Chr4:487513 3.62E-12 transposed
Cme07g00418 Cme-Chr7:2743792 Cme04g00064 Cme-Chr4:487513 8.61E-18 transposed
Cme12g01255 Cme-Chr12:20672307 Cme04g00064 Cme-Chr4:487513 1.43E-39 transposed
Cme04g00064 Cme-Chr4:487513 Cme06g00332 Cme-Chr6:2050839 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g621 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0438 . . . . Chy04g00050 . . . . . . . Bma05g00717 . . . Cmo19g00502 . . . . . . Bhi05g00520 . . . . . . Cla09g01176 Cam09g1241 Cec09g1257 Cco09g1287 . . Cre09g1205 . Csa03g04650 . Cme04g00064
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000261 5 7 3 6 5 5 6 5 5 5 4 4 4 6 5 6 4 8 5 5 5 5 5 5 5 4 4 8 5 5 154
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00064 Cme_Chr04 FPKM 43.170643 48.083607 26.782452 25.495899 36.009327 37.853275 37.249847 28.740166 26.892353 27.049845