Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00065 ATGGCTCTCTCTTCTTTCTCTTCTGTTTTTGTTTTTGCAATAACTTTGCTTCTCATGCTAAGGCTTTCAGAGAGTGCCACGTGTAATGATTGTTTCACACGCTCTCGAGCCTCTCATTACCCTAACTCGGAGGAGCAAGGAACAGATCATGGAGCATGTGGGTATGGAACTTTTGGAGCAACGATTAACGATGGAGATGTTGCAACTGCCTCTGATCTTTACAGAAATGGCCTTGGTTGTGGAGCTTGTTACCAGATAAGGTGCATAGACAGTGAATTGTGCTCAGAGAAAGGAACAATGGTGGTGATAACAGATCAAGGCTCAGGTCCTGGCGATTTTATTATGAGCCGAAGAGCCTATGCTGGGTTGGCTCAAACCCCTTATGCTGCTGTCTCTTTGATGGCCCTTGGTGTCATTGACATTGAATACAAACGAGTGGCTTGCAGTTACCCAAACAAAAACATAACAATAAAGATTGATGAGAATAGCGATGCTCCTCATTACTTGGCCTTTGTCATAAGGTTTCAACAAGGAAAAAATGACATCACAGCAGTTCAACTTTGTGAGACGAAAAACTTCGTGTGCAAGTTATTAGATCGAAGCTACGGTACTGTATGGACGACAACATCGCCACCGAGGGGACCGTTGTCATTGAGAATGTTGCTGACAAACGAGGAGGGAGACGAGCAGTGGATTGTCCCCATTAATGATATTCCTCGTGATTGGAAGGCTGGAGATATCTACGACACTGGAGTTCAAGTTAATTAA 768 44.01 MALSSFSSVFVFAITLLLMLRLSESATCNDCFTRSRASHYPNSEEQGTDHGACGYGTFGATINDGDVATASDLYRNGLGCGACYQIRCIDSELCSEKGTMVVITDQGSGPGDFIMSRRAYAGLAQTPYAAVSLMALGVIDIEYKRVACSYPNKNITIKIDENSDAPHYLAFVIRFQQGKNDITAVQLCETKNFVCKLLDRSYGTVWTTTSPPRGPLSLRMLLTNEEGDEQWIVPINDIPRDWKAGDIYDTGVQVN 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 498019 500390 + MELO3C003371.2.1 Cme04g00065 324326

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00065 255 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 167 250 IPR007117 -
Cme04g00065 255 Pfam Lytic transglycolase 69 143 IPR009009 -
Cme04g00065 255 Pfam Expansin C-terminal domain 155 236 IPR007117 -
Cme04g00065 255 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 153 IPR007112 -
Cme04g00065 255 SUPERFAMILY Barwin-like endoglucanases 20 152 IPR036908 -
Cme04g00065 255 SMART dpbb_1 66 143 IPR007112 -
Cme04g00065 255 Gene3D - 150 254 IPR036749 -
Cme04g00065 255 SUPERFAMILY PHL pollen allergen 153 249 IPR036749 -
Cme04g00065 255 Gene3D - 19 149 IPR036908 -
Cme04g00065 255 PANTHER EXPANSIN-B3 6 255 - -
Cme04g00065 255 PANTHER POLLEN ALLERGEN ORY S 1, PUTATIVE-RELATED 6 255 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00065 - - - csv:101204155 506.138
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00036 Cme-Chr4:229892 Cme04g00065 Cme-Chr4:498019 8.88E-69 dispersed
Cme04g00065 Cme-Chr4:498019 Cme01g01181 Cme-Chr1:15037302 2.74E-61 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g630 . Blo03g00121 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0450 Cone12ag0440 . . . . Chy04g00051 . . . . . . . . . . . . . . . . . . . . . . . . . Cla09g01175 Cam09g1240 Cec09g1256 Cco09g1286 . . Cre09g1204 . Csa03g04649 . Cme04g00065
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012023 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 0 1 4 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00065 Cme_Chr04 FPKM 22.816223 26.462549 30.586525 30.291267 18.389175 20.44442 16.942089 23.74054 22.226366 19.349117