Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00072 ATGGGGATTTTGAAGATATTGGTGGTGGTAATATTTGGTGTTGTTTTGCATGGAATTGAAAGTTTAGGGGAAGGACTTTTGGTTTTTGACTACTACAAAGAAACATGCCCTTTTGTCGAAGATATTGTTCGACGACAAGTTGAGATTGCTGTGCACAAAGATCCTCGAATGGCTGCTTCTCTCCTTCGATTGCATTTTCATGATTGTTTTGTTATGGGATGTGATGCATCAGTTCTTCTAGATAGCATTGACGAGATGGTGAGCGAAAAGCAAGCGGCTCCAAATTTAAACTCTCTTCGTGGTTTCAGTATCATCGATGAGATAAAATACATATTGGAAGAAGCTTGTCCTTACACTGTATCTTGTTCTGATATTTTGACCATTGCTGCTCGGGATGCTGTTGTACTCAGAGGAGGACCTGAATGGGCAGTGTTATTGGGAAGGAAAGACTCCTTGAAAGCAAGCTTTGATGGTGCCAACAAATACATTCCTTCTCCCAATTCTTCCCTTGAGACCTTAATTGCCAACTTTCAACAACAAGGCCTTAATGTTCAAGACTTGATTGTTTTGTCAGGAAGCCACACCATAGGGAAAGCAAGATGCTTGAGTTTTAGACAAAGAGTATATGAAATGAATGAAGGAGAAGAAGGAGGAGGAGAAGAAGGAGATAGATACAAGAGATACAATACATATAAAAGAATTTTAAGGTCAATTTGCCCTAAAACAGGCCAAGATCAAAGGGTAGCACCCTTGGATTTTAGGACACCAGCAAGATTTGACAACCATTATTTCCTCAACATTCTTGAAGGCAAAGGGCTTTTAGGGTCTGATGATGTGCTCATAACCCAAGATTATGAAGGTGAAATTAGAAGACAAGTTTGGAGCTATGCTTCTGATCAAACCCTCTTCTTTGATTCATTTGTTAAGTCCATTGTCAAGATGGGGAATATCAATGTCCTCACTTCTCATGAAGGTGAAGTAAGAAGAAATTGTAGGTTTATCAATCACTAA 1011 39.27 MGILKILVVVIFGVVLHGIESLGEGLLVFDYYKETCPFVEDIVRRQVEIAVHKDPRMAASLLRLHFHDCFVMGCDASVLLDSIDEMVSEKQAAPNLNSLRGFSIIDEIKYILEEACPYTVSCSDILTIAARDAVVLRGGPEWAVLLGRKDSLKASFDGANKYIPSPNSSLETLIANFQQQGLNVQDLIVLSGSHTIGKARCLSFRQRVYEMNEGEEGGGEEGDRYKRYNTYKRILRSICPKTGQDQRVAPLDFRTPARFDNHYFLNILEGKGLLGSDDVLITQDYEGEIRRQVWSYASDQTLFFDSFVKSIVKMGNINVLTSHEGEVRRNCRFINH 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 537111 539520 + MELO3C003377.2.1 Cme04g00072 324333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00072 336 PANTHER PEROXIDASE 20 5 335 - -
Cme04g00072 336 PRINTS Haem peroxidase superfamily signature 58 72 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme04g00072 336 PRINTS Haem peroxidase superfamily signature 120 137 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme04g00072 336 PRINTS Haem peroxidase superfamily signature 138 150 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme04g00072 336 PRINTS Haem peroxidase superfamily signature 186 201 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme04g00072 336 PRINTS Haem peroxidase superfamily signature 252 267 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme04g00072 336 ProSiteProfiles Plant heme peroxidase family profile. 26 335 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme04g00072 336 PANTHER PEROXIDASE 72-RELATED 5 335 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme04g00072 336 Gene3D - 31 335 - -
Cme04g00072 336 Gene3D Peroxidase, domain 2 164 314 - -
Cme04g00072 336 PRINTS Plant peroxidase signature 36 55 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme04g00072 336 PRINTS Plant peroxidase signature 60 80 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme04g00072 336 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme04g00072 336 PRINTS Plant peroxidase signature 119 129 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme04g00072 336 PRINTS Plant peroxidase signature 138 153 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme04g00072 336 PRINTS Plant peroxidase signature 185 197 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme04g00072 336 PRINTS Plant peroxidase signature 250 265 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme04g00072 336 PRINTS Plant peroxidase signature 266 283 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme04g00072 336 PRINTS Plant peroxidase signature 309 322 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme04g00072 336 ProSitePatterns Peroxidases active site signature. 58 69 IPR019794 GO:0004601
Cme04g00072 336 Pfam Peroxidase 43 298 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme04g00072 336 CDD secretory_peroxidase 27 334 IPR033905 GO:0004601|GO:0042744
Cme04g00072 336 ProSitePatterns Peroxidases proximal heme-ligand signature. 186 196 IPR019793 -
Cme04g00072 336 SUPERFAMILY Heme-dependent peroxidases 28 335 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00072 Cme-Chr4:537111 Cme07g01686 Cme-Chr7:22396550 3.63E-112 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00072 K00430 - csv:116402797 610.527