Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00106 ATGGCTGGTTTGGATTTAGGCAATCGCTATATTCACCAACTTCAAACCCCTAATTTCAACCTCCCTATACACCATCATCACCACCACCATCCCGACTCTCAATCTCATCACGATGACGACGAATCCCCCCATCATCCCTTGGAATTTGTCCCCACCACCGCCACCACCACCGATATGGTTGCCTCTCGTCGGCCACGCGGTCGTCCACCCGGTTCTAAAAACAAGCCAAAGCCACCGGTCATCATAACTCGGGAAAGCGCCAATACTCTAAGGGCTCATATTCTCGAGGTTGGTAGTGGGTGTGACGTCTTTGATAGCATCGCCACTTATGCTCGTCGTCGCCAACGCGGGATCTGCATCTTAAGTGGGAACGGAATGGTAAACAATGTCAACTTAAGGCAACCGACTGCAACGGGGTCTGTGTTAACTCTACAAGGAAGGTTTGAGATATTATCCCTTTCTGGATCTTTCTTGCCGCCGCCTGCTCCACCCGGCGCCACTAGTTTGACTATATACTTAGCCGGTGGACAAGGGCAAGTGGTCGGTGGAAACGTTGTCGGAGAATTAGTGGCAGCAGGGCCAGTGACAATCATCGCTGCATCGTTTACAAATGTAGCGTATGAGAGATTACCACTAGAAGATCAAGAACAAGAACAACAAGAACAGGAACAAGATCAGATGCAGCCACCAACGTCGCAGGGTGGTGGCAATAGCGTCGGTGGCGGTGGAAGCAATAACCCATTTCCAGATCCATCTTCAGGGCTTCCTTTCTTCAATTTGCCAATAAATATGCAAAACCAAATTCAACTACCGTTCTAA 819 49.45 MAGLDLGNRYIHQLQTPNFNLPIHHHHHHHPDSQSHHDDDESPHHPLEFVPTTATTTDMVASRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVGSGCDVFDSIATYARRRQRGICILSGNGMVNNVNLRQPTATGSVLTLQGRFEILSLSGSFLPPPAPPGATSLTIYLAGGQGQVVGGNVVGELVAAGPVTIIAASFTNVAYERLPLEDQEQEQQEQEQDQMQPPTSQGGGNSVGGGGSNNPFPDPSSGLPFFNLPINMQNQIQLPF 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 850979 852335 + MELO3C003402.2.1 Cme04g00106 324367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00106 272 ProSiteProfiles PPC domain profile profile. 87 223 IPR005175 -
Cme04g00106 272 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 271 IPR014476 GO:0003680
Cme04g00106 272 MobiDBLite consensus disorder prediction 214 259 - -
Cme04g00106 272 Pfam Plants and Prokaryotes Conserved (PCC) domain 91 204 IPR005175 -
Cme04g00106 272 CDD DUF296 91 174 IPR005175 -
Cme04g00106 272 PIRSF ESCAROLA 9 270 IPR014476 GO:0003680
Cme04g00106 272 MobiDBLite consensus disorder prediction 222 259 - -
Cme04g00106 272 MobiDBLite consensus disorder prediction 32 46 - -
Cme04g00106 272 MobiDBLite consensus disorder prediction 21 80 - -
Cme04g00106 272 Gene3D - 90 224 - -
Cme04g00106 272 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 271 - -
Cme04g00106 272 SUPERFAMILY AF0104/ALDC/Ptd012-like 87 216 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00106 Cme-Chr4:850979 Cme11g02481 Cme-Chr11:31446850 5.05E-93 dispersed
Cme04g00106 Cme-Chr4:850979 Cme06g02479 Cme-Chr6:31767235 1.38E-86 wgd
Cme04g00106 Cme-Chr4:850979 Cme06g00302 Cme-Chr6:1851064 6.63E-95 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00106 - - cmo:103503535 461.07