Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00108 TTTATTTCAACTTCTCTAAAACTTCCTTTCACTATTTCTTTCTTCTTCACTCAAAAATTTCTCATTTTTAAAGAATTAATAAGAACAACCCAAGAACAACAAGAATCTCTTTACTCTCAATTTACAAACTTTCTTTTTCTTGATCCTCTTTTTCTTCTTTCTTTTTTCTTCCCTTTAATGGATTCACTTGATACTCCACCTCCTCCACTTTCCGCACCTTCCAACATGGCCATCGGAGGACAAACCGCGTATTCACCCGCCAACAACAATGCCTCCTCCACCATTGCTCTCAATCAACCTTCAGCTCAAATGATCCCGCCTTCATCCCGATTTCCCTTTAACCACCCTGTGATCCCACCTTCATCCGTACCTTTGGATTCTCTAAACGTTTCTCCTTACGACGGATCGCATTCCGCTAATTTCAACGTTGATTCCGGTAAGAAAAGGAGAGGCCGACCCAGGAAGTACGCTCCTGATGCTAACAACATTGCCTTGGGTTTGGCTCCTACACCCACTGTTGGGTCTTCTGTTCCTCATGGAGATTTGAGCGCTACTCCTGATTCGGAACAACCCGCCAGGAAAACCAGAGGAAGGCCACCGGGGTCCGGAAAGAAGCAATCCAATTCCATTGGTTCGGGTGGAACTGGTTTTACTCCTCATGTCTTATTGGCAAAGCCTGGAGAGTATTTAGGTTGGGATGCCGACAACTTTGAAGTTGAGAGACTCATTGGTCGAAATATGGGTTCCTTGCAGGATGTAGCAGCCAAAATTTTGTCCTTCTCACAGCAAGGACCACGAACTGTCTTCATTCTCTCTGCAAATGGTACTCTCAGTAATGCTACCCTTCGACACTCGGCATCGTCTGGTGGTTCTGTGTCATATGAGTGGCTTATAGACATGGTTTCTAAGGTCAGACAGAAGCCATATTTGCCTGCAAAAACCGAATTTTTTATTTTCAGAAGTGCACTTTTCTTGGCTCAAGTGGCATTGCTCGGGCACTATGACATTATCTCTCTGTCAGGCTCGTTTTTACTGTCGGAGAATAATGGAACTCGAAGTAGAACAGGTGGTTTGAGTGTGCTACTGGCTGGATCAAATGGACAGGTTCTTGGTGGTGGAGTTGCGGGAATGTTAATGGCAAGTTCTCAAGTACAGGTGATTGTGGGAAGTTTTCTAGAGGATGATAAAAAATCCAACACAAGTATGCTGAACTCTGGAACTTCATCTGCACCATCACAAATGATAAACTTCGGTGGTGGTGGTGGTGGTGGGCTAGCAGCAGCAGCAGCTAGCCCTCCGTCGTTGGGGGGATCGAGCGGGGAGTCGTCTGGTGAAAATGGAGATAGCCCTCTTAATAATAGGCATCCTGGAATGTTCAATAATTCTAGCCAGCCAATCCACAATATTCAGATGTACCAATTATGGGCAGGCCAAACACAGCAGTGA 1446 45.16 FISTSLKLPFTISFFFTQKFLIFKELIRTTQEQQESLYSQFTNFLFLDPLFLLSFFFPLMDSLDTPPPPLSAPSNMAIGGQTAYSPANNNASSTIALNQPSAQMIPPSSRFPFNHPVIPPSSVPLDSLNVSPYDGSHSANFNVDSGKKRRGRPRKYAPDANNIALGLAPTPTVGSSVPHGDLSATPDSEQPARKTRGRPPGSGKKQSNSIGSGGTGFTPHVLLAKPGEYLGWDADNFEVERLIGRNMGSLQDVAAKILSFSQQGPRTVFILSANGTLSNATLRHSASSGGSVSYEWLIDMVSKVRQKPYLPAKTEFFIFRSALFLAQVALLGHYDIISLSGSFLLSENNGTRSRTGGLSVLLAGSNGQVLGGGVAGMLMASSQVQVIVGSFLEDDKKSNTSMLNSGTSSAPSQMINFGGGGGGGLAAAAASPPSLGGSSGESSGENGDSPLNNRHPGMFNNSSQPIHNIQMYQLWAGQTQQ 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 858647 862283 - MELO3C003404.2.1 Cme04g00108 324369

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00108 481 MobiDBLite consensus disorder prediction 136 217 - -
Cme04g00108 481 MobiDBLite consensus disorder prediction 426 463 - -
Cme04g00108 481 Gene3D - 248 406 - -
Cme04g00108 481 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8 103 296 - -
Cme04g00108 481 SUPERFAMILY AF0104/ALDC/Ptd012-like 251 393 - -
Cme04g00108 481 CDD DUF296 251 391 IPR005175 -
Cme04g00108 481 Pfam Plants and Prokaryotes Conserved (PCC) domain 251 391 IPR005175 -
Cme04g00108 481 ProSiteProfiles PPC domain profile profile. 237 413 IPR005175 -
Cme04g00108 481 MobiDBLite consensus disorder prediction 435 463 - -
Cme04g00108 481 MobiDBLite consensus disorder prediction 201 215 - -
Cme04g00108 481 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 330 450 IPR039605 GO:0003680
Cme04g00108 481 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 103 296 IPR039605 GO:0003680
Cme04g00108 481 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8 330 450 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00108 - - - csv:101205370 636.336
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00108 Cme-Chr4:858647 Cme03g01327 Cme-Chr3:22821262 1.57E-46 dispersed
Cme04g00108 Cme-Chr4:858647 Cme06g02478 Cme-Chr6:31751191 5.70E-101 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g637 . . . . . . Bma07g00961 . Cmo06g00662 Cmo16g01203 . . . . . Cpe14g00855 . Bhi11g00147 . . . Hepe06g1765 Mch10g1643 . . . . . . . . . . . . . . Chy04g00085 . Blo03g00838 Blo19g00178 . . . . . . . . Cmo19g00256 Cma06g00655 Cma16g01152 Car06g00584 Car16g01092 . Cpe15g00219 . . . . . . . . . . . . . . . . Chy06g02136 Cme04g00108
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012965 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 0 1 2 1 0 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00108 Cme_Chr04 FPKM 2.859023 4.251021 1.98291 2.736268 18.603209 18.767109 13.907238 4.499691 3.901985 4.363291