Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00113 ATGGAAAAGGGCGAACCGTCAGAAATCGACCACAACGCCACCCCCACCGCCACCGCTACCGTCACCGCTCACCACCTCTCCGTCCCAACTGGATTAGCTCAACACGAGTTCGACAACTTGAGGAATCTCATCTTCGAGTTCCACACCTACGAACTCCGCCCCGGCCAATGCTCCTCCCTCCTTTCTCAACTCATACGAGCGCCGCGCGATGTGGTTTGGTCCGTCGTTCGCCGCTTCGATAAACCTCAAACTTACAAACACTTCATCAAAAGCTGTACAGTCGCGGATGACTTCATAATGACCGTAGGATGTACTAGAGACGTCAATGTAATCTCCGGTCTCCCGGCGGCGACAAGTACAGAGCGGCTCGATATACTCGACGACGATCGGTATGTGACTGGTTTTAGTATCACTGGGGGTGAGCATCGATTGAGGAACTACCGTTCTGTTACGACAGTACATGAAATGGAGCGTGACGGTCAGATCTGGACCTTGGTGTTGGAATCGTACATCGTGGATGTGCCGGAAGGGAATACGGAAGAGGATACACGATTATTTGCTGATACTGTTGTGAAATTGAATCTGCAGAAGCTTACATCCGTTACTGAAGGAATGGTTCGTGCCGTTGATTCTGCTTCTGCTGCTGCTTCAGGTACTACACCTTCATCTAAATCATCATCACACTGA 687 50.66 MEKGEPSEIDHNATPTATATVTAHHLSVPTGLAQHEFDNLRNLIFEFHTYELRPGQCSSLLSQLIRAPRDVVWSVVRRFDKPQTYKHFIKSCTVADDFIMTVGCTRDVNVISGLPAATSTERLDILDDDRYVTGFSITGGEHRLRNYRSVTTVHEMERDGQIWTLVLESYIVDVPEGNTEEDTRLFADTVVKLNLQKLTSVTEGMVRAVDSASAAASGTTPSSKSSSH 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 883389 884682 + MELO3C003408.2.1 Cme04g00113 324374

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00113 228 Pfam Polyketide cyclase / dehydrase and lipid transport 62 201 IPR019587 -
Cme04g00113 228 Gene3D - 18 221 IPR023393 -
Cme04g00113 228 PANTHER - 29 214 - -
Cme04g00113 228 SUPERFAMILY Bet v1-like 57 199 - -
Cme04g00113 228 CDD PYR_PYL_RCAR_like 57 203 - -
Cme04g00113 228 PANTHER ABSCISIC ACID RECEPTOR PYL1 29 214 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00113 K14496 PYL; abscisic acid receptor PYR/PYL family - csv:101218875 396.356
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme04g00113 Cme06g02476 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00113 Cme-Chr4:883389 Cme08g02175 Cme-Chr8:27795093 7.76E-60 dispersed
Cme07g00232 Cme-Chr7:1526109 Cme04g00113 Cme-Chr4:883389 5.95E-70 transposed
Cme04g00113 Cme-Chr4:883389 Cme06g02476 Cme-Chr6:31728857 1.99E-104 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g668 . . . . . . . Bma14g00150 Cmo06g00660 Cmo16g01205 Cma02g01612 . Car02g01371 . Sed04g0833 Cpe14g00958 Cpe05g00179 Bhi11g00153 Tan01g2184 Cmetu06g1142 . . Mch10g1649 . Cla10g00162 Cam10g0163 Cec10g0173 Cco10g0172 Clacu10g0164 Cmu10g1013 Cre10g0423 . . . . Lsi07g01201 . Chy04g00088 Cme06g02476 Blo03g00855 Blo19g00186 Bda07g00102 Bda09g00718 Bpe08g00837 Bpe11g00339 . Bma12g00209 . Cmo02g01656 Cmo19g00254 Cma06g00652 Cma16g01154 Car06g00582 Car16g01094 . Cpe15g00217 Bhi05g00505 . . . Hepe06g1024 . . Cla09g01132 Cam09g1188 Cec09g1202 Cco09g1223 . . Cre09g1149 . Csa03g04613 Chy06g02140 Cme04g00113
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001571 2 3 3 2 3 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 1 2 3 2 1 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00113 Cme_Chr04 FPKM 0.0 0.0 0.0 0.0 1.920008 1.149882 1.061215 0.0 0.0 0.0