Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00117 CCGCCATCTTTCATCTCCTTCATTAACTCTTCCCTCTCCTCCGGCCACCGTCTGCCGGATCAGATTCCATTCTCATCCACCCACCCCCATCAACTGTATGGAATGACGGACTACAGATTACCCCCGACCATGAATCTCTGGGCGGATGAGAACGCTTCCATGATGGATGTTTTCATGAATACCGATCTGAGTTCTTTCTGGGTTACACCGCCACAGTCACAGCAACTCCCTCAGCCCTCCTACTCCACGGCGACTGACCCTAGTAAAGTCGTTGGTCAAACACCACCGCAGCCGCCGCCGCCCCCGTCGTCCATGGCGGTTTTTAACCAAGAGACTCTTATGCAGCGTCTTCAAACATTGATTGAAGGTGCTCAAGAGAACTGGACTTATGCTATTTTTTGGCAGTCTTCGTATGATTATTCCGGCGGTACTGTGTTGGGGTGGGGAGATGGATATTATAAAGGTGAGGAAGATAAAGGGAAAGAGAAAGCTAAATCCAGTAGTTCAAAAGCAGAGCAAGAGCATCGGAAGAAGGTACTTCGTGAGCTTAACTCTCTCATTTCTGGTTCTCCTACCTCTGAAGCCGATGCTGTTGATGAGGTTGTTACCGACACCGAGTGGTTTTACTTGGTGTCGATGACTCAATCGTTTGTCTCCGGTCTCGGATTGCCGGGACAGGCGTTTTTCGATTCCAATCCTATTTGGGTTGCTGGTTCGGATCGGCTTGCGAGCTCTTTCTGTGAACGAGCTCGTCAGGGTCAGGTTTTCGGGTTACAGACTATGGTTTGTATACCGTCGGCGAACGGAGTTGTTGAATTGGGTTCGAGTGATTTGATTTTCCAGAGCTCCGATCTGATGAATAAGGTTAGGGTTTTGTTTAATTTCAACAATCTGGAAGTGGAAACTTGGCCAATTAGTGGTGTTGACCAAGGGGAGAATGATCCTTCTTCGCTTTGGATTAGTGAACCATCTTCAAACGCCATTGAAATTACGAATCCTGTTCCTTCTGCTTCAGCTCCAACTCCCAGCACAACAAACAGCCAACCCATTTCCAAAATTACAACCGAGACGATTGAGAATCCCAATAAATCTAGTGTTGTAGTTGAAACTCCAAGTTCTTCTGTTCCTCCTCCTTCTCAGAAAACTCATCGACAGTCTCAGCCGAATCAAACACAGAGCTTCTTCACCAACAGGGAATTGAATTTCTCAGAATTAGGATTTGAGAATGGTCGTTTGAAGGATAGGAATTCCACTTCGTTGAAGCCGGAATCCGGTGAGATTCTGAATTTTGGGGAGAGTAAGAGAAGTAGTTCTTATCCCAACACAGATAACAACTTACCTTCAGGGAATTCCTTATTTGGAGGGGATGAGAATAAAAAGAAGAGATCCCCAACTTCCCGTGGGAGTAACGAAGAAGGGATGCTTTCTTTTACTTCTGGTGTGATTCTTCCTTCCTCTGGAGGTGTGAAATCGGGTGTTTGCGCTGGTGATTCCGATCACTCCGATCTTGAAGCTTCGGTAATTCGTGAGGTGGAGAGTAGTAGAGTGGTGGAGCCGGAGAAGCGGCCTCGAAAAAGAGGGCGAAAGCCAGCAAATGGTAGAGAAGAACCATTGAATCATGTCGAAGCAGAGAGGCAGAGGAGAGAAAAGCTTAACCAAAGATTCTATGCTCTTCGAGCTGTTGTTCCGAATGTATCCAAAATGGACAAAGCTTCACTCCTTGGTGATGCTATCTCTTACATCAATGAACTTAGAGGGAAGCTTCAAACTGCTGAATCAGATAAGGAAGATCTACAGAAGCAATTGGATTCAGTGAAGAAGATGATGATGTCCTCTTCTAGTAAAGATTCATGCGTGTCAAGCTCGAATCAACCCCCACCAGATCAAGACATAAAATCATCAAACATAAACCATAATGATATCGAAACTGATATCGACGTAAAGATCATCAGTTGGGATGCAATGATCCGAATCCAATCTAGTAAGAAAAACCATCCTGCTGCACGGTTGATGGCAGCTCTGGAGGAACTCGACTTGGATATAAACCACGCGAGCATCTCGGTTGTCAATGATCTCATGATCCAACAAGCAACCGTGAAGATGGGGAGTCGGTTATACACTCAAGAGCAGTTAAGGATAGCATTATCGTCGAAAATAGGCGCAACTCGGTAG 2172 45.9 PPSFISFINSSLSSGHRLPDQIPFSSTHPHQLYGMTDYRLPPTMNLWADENASMMDVFMNTDLSSFWVTPPQSQQLPQPSYSTATDPSKVVGQTPPQPPPPPSSMAVFNQETLMQRLQTLIEGAQENWTYAIFWQSSYDYSGGTVLGWGDGYYKGEEDKGKEKAKSSSSKAEQEHRKKVLRELNSLISGSPTSEADAVDEVVTDTEWFYLVSMTQSFVSGLGLPGQAFFDSNPIWVAGSDRLASSFCERARQGQVFGLQTMVCIPSANGVVELGSSDLIFQSSDLMNKVRVLFNFNNLEVETWPISGVDQGENDPSSLWISEPSSNAIEITNPVPSASAPTPSTTNSQPISKITTETIENPNKSSVVVETPSSSVPPPSQKTHRQSQPNQTQSFFTNRELNFSELGFENGRLKDRNSTSLKPESGEILNFGESKRSSSYPNTDNNLPSGNSLFGGDENKKKRSPTSRGSNEEGMLSFTSGVILPSSGGVKSGVCAGDSDHSDLEASVIREVESSRVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRGKLQTAESDKEDLQKQLDSVKKMMMSSSSKDSCVSSSNQPPPDQDIKSSNINHNDIETDIDVKIISWDAMIRIQSSKKNHPAARLMAALEELDLDINHASISVVNDLMIQQATVKMGSRLYTQEQLRIALSSKIGATR 723
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 902979 905666 - MELO3C003412.2.1 Cme04g00117 324378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00117 723 MobiDBLite consensus disorder prediction 407 473 - -
Cme04g00117 723 CDD bHLH_AtAIB_like 532 603 - -
Cme04g00117 723 Gene3D - 534 612 IPR036638 GO:0046983
Cme04g00117 723 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 113 293 IPR025610 -
Cme04g00117 723 MobiDBLite consensus disorder prediction 69 91 - -
Cme04g00117 723 SMART finulus 541 590 IPR011598 GO:0046983
Cme04g00117 723 MobiDBLite consensus disorder prediction 509 545 - -
Cme04g00117 723 PANTHER MYC 45 720 IPR045084 GO:0003700|GO:0006355
Cme04g00117 723 Coils Coil 581 608 - -
Cme04g00117 723 MobiDBLite consensus disorder prediction 430 452 - -
Cme04g00117 723 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 538 610 IPR036638 GO:0046983
Cme04g00117 723 MobiDBLite consensus disorder prediction 606 637 - -
Cme04g00117 723 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 535 584 IPR011598 GO:0046983
Cme04g00117 723 MobiDBLite consensus disorder prediction 69 102 - -
Cme04g00117 723 MobiDBLite consensus disorder prediction 606 634 - -
Cme04g00117 723 PANTHER TRANSCRIPTION FACTOR MYC2 45 720 - -
Cme04g00117 723 MobiDBLite consensus disorder prediction 329 395 - -
Cme04g00117 723 Pfam Helix-loop-helix DNA-binding domain 539 584 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme04g00117 Cme06g02473 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00117 Cme-Chr4:902979 Cme11g02260 Cme-Chr11:29729018 1.88E-24 dispersed
Cme11g00758 Cme-Chr11:9430545 Cme04g00117 Cme-Chr4:902979 2.15E-06 dispersed
Cme04g00128 Cme-Chr4:971493 Cme04g00117 Cme-Chr4:902979 2.75E-11 transposed
Cme05g00359 Cme-Chr5:2860112 Cme04g00117 Cme-Chr4:902979 2.12E-15 transposed
Cme06g00385 Cme-Chr6:2420541 Cme04g00117 Cme-Chr4:902979 7.60E-17 transposed
Cme04g00117 Cme-Chr4:902979 Cme06g02473 Cme-Chr6:31713059 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41125 PF14215 bHLH-MYC_N 8.40E-55 CL0161 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00117 K13422 - csv:101218165 1202.96