Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00118 ATGGCGTCTGATAGCTTCACCGACAAGAACGCAGTTTTCAAGAGGCTAAAGGCCAAGTCGGAGAACAAGATCTGTTTCGATTGTAATGCGAAGAACCCAACTTGGGCGTCCGTTTCGTTTGGGATCTTCCTTTGCATTGATTGTTCTGCTGTTCATCGGAGCCTTGGCGTCCATATAAGCTTCGTCAGGTCAATAAATTTGGACTCATGGTCACCGGAGCAGCTGAAAATGATGAGCTACGGCGGAAACAACCGTGCTCAGGTGTTCTTCAAGCAGCACGGTTGGAATGACGATGGCAAAATTGAAGCCAAGTACACATCCAGAGCTGCAGATTTGTATAAACGAACCCTTTCCAAAGAAGTCGCTAAAACCATGGCTGAAGAACCCCCTTGCCCCTCTTCCCCTGTTTCTTCTCACTCCAATGGCAATGGCAATGGCAAGAGCAATGGTAATGCCCTCCCATCAATCAAAACCACCAAACAAGAAGCCCCTGAAATTTCTTCTTCTCCAAAAGCCTCTCATTCTGTTGTTGTCAAAAAACCCATCGGTGCGAAAAAGACAGGCAAGATCGGCGGACTTGGCGCTCGGAAGCTTACCACGAAGACGAGTGAGAATCTATATGATCAGAAACCGGAAGACCCACCGACACCGGTTTCGTCGTCAATAACAACAAATGGTACAACGGCTTCATTGTTGGCTTCTCGGTTCGAGTATGTTGAGAACGCACAATCTTCTGATGTGAGCTCTAATGGTTCCCCTGTGTTTGGACATATTGCTCCACCGAAATCCTCAAGCTTCTTTGCTGAATTTGGAATGGATAATAATCACAGTGGTGTGTATTCAAAGAAAACGGGCTCAAATTCCACCAAAATCCAGGTGGAAGAAACTGAAGAAGCTCGAAAGAAATTCTCAAATGCAAAATCAATTTCGTCTGCTCAATTCTTCGGTGATCAAAACAAATCTGCCGAGTCAGAGGCGAAGGCTTCATTGCAGAAATTTACAAGTTCGTCGGCGATCTCAAGTGCCGATCTGTTCGGACAGGGGATGGATGATTCGACTCTGGATCTCGCAGCAAATGAATTCATCAGCCGGATTTCTTTACAGGCTTCACAAGATATATCATCGTTGAAGAACATGGCGGGGGAGACGGGGAGGAAGCTAAGCTCCTTTGCATCAACGTTGATGACTGATATTCAAGACAGGATTCTTTGA 1212 46.04 MASDSFTDKNAVFKRLKAKSENKICFDCNAKNPTWASVSFGIFLCIDCSAVHRSLGVHISFVRSINLDSWSPEQLKMMSYGGNNRAQVFFKQHGWNDDGKIEAKYTSRAADLYKRTLSKEVAKTMAEEPPCPSSPVSSHSNGNGNGKSNGNALPSIKTTKQEAPEISSSPKASHSVVVKKPIGAKKTGKIGGLGARKLTTKTSENLYDQKPEDPPTPVSSSITTNGTTASLLASRFEYVENAQSSDVSSNGSPVFGHIAPPKSSSFFAEFGMDNNHSGVYSKKTGSNSTKIQVEETEEARKKFSNAKSISSAQFFGDQNKSAESEAKASLQKFTSSSAISSADLFGQGMDDSTLDLAANEFISRISLQASQDISSLKNMAGETGRKLSSFASTLMTDIQDRIL 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 921832 924683 + MELO3C003413.2.1 Cme04g00118 324379

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00118 403 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
Cme04g00118 403 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD9-RELATED 1 403 - -
Cme04g00118 403 Pfam Putative GTPase activating protein for Arf 12 113 IPR001164 GO:0005096
Cme04g00118 403 Gene3D Arf GTPase activating protein 1 135 IPR038508 -
Cme04g00118 403 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Cme04g00118 403 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Cme04g00118 403 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Cme04g00118 403 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 1 403 - -
Cme04g00118 403 CDD ArfGap_ArfGap2_3_like 8 123 - -
Cme04g00118 403 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Cme04g00118 403 MobiDBLite consensus disorder prediction 131 174 - -
Cme04g00118 403 SUPERFAMILY ArfGap/RecO-like zinc finger 11 126 IPR037278 -
Cme04g00118 403 MobiDBLite consensus disorder prediction 123 224 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00118 K12493 ARFGAP2_3; ADP-ribosylation factor GTPase-activating protein 2/3 K11855 csv:101217929 729.554
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme04g00118 Cme06g02472 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00118 Cme-Chr4:921832 Cme10g00034 Cme-Chr10:307339 2.78E-20 dispersed
Cme01g00519 Cme-Chr1:3831534 Cme04g00118 Cme-Chr4:921832 2.02E-13 transposed
Cme04g00732 Cme-Chr4:8448029 Cme04g00118 Cme-Chr4:921832 4.46E-23 transposed
Cme04g02608 Cme-Chr4:32015086 Cme04g00118 Cme-Chr4:921832 5.42E-31 transposed
Cme07g01989 Cme-Chr7:24989258 Cme04g00118 Cme-Chr4:921832 4.21E-15 transposed
Cme08g00084 Cme-Chr8:570232 Cme04g00118 Cme-Chr4:921832 1.13E-18 transposed
Cme08g01127 Cme-Chr8:7884352 Cme04g00118 Cme-Chr4:921832 1.41E-13 transposed
Cme10g01566 Cme-Chr10:20568660 Cme04g00118 Cme-Chr4:921832 1.25E-15 transposed
Cme11g00964 Cme-Chr11:13682227 Cme04g00118 Cme-Chr4:921832 2.71E-13 transposed
Cme04g00118 Cme-Chr4:921832 Cme06g02472 Cme-Chr6:31695628 7.21E-175 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g672 Blo02g00992 . . Bda08g00628 Bpe05g00530 . . . Cmo06g00656 Cmo16g01209 . . . . Sed02g0115 Cpe14g00961 . Bhi11g00157 Tan01g2189 Cmetu06g2430 . . Mch10g1655 . Cla10g00158 Cam10g0158 Cec10g0168 Cco10g0167 Clacu10g0160 Cmu10g1009 Cre10g0419 Cone8ag0472 Cone12ag0466 . . Lsi07g01197 . Chy04g00094 Cme06g02472 . . . . . . Bma05g00713 . Sed01g4109 . Cmo19g00250 Cma06g00647 Cma16g01158 Car06g00578 Car16g01098 . Cpe15g00213 Bhi05g00496 Tan07g1980 . . . . . Cla09g01127 Cam09g1182 Cec09g1193 Cco09g1214 . . Cre09g1144 . Csa03g04608 Chy06g02144 Cme04g00118
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001954 2 2 2 3 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 3 2 1 2 4 3 1 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00118 Cme_Chr04 FPKM 0.0 0.0 0.0 0.35235 0.0 0.0 0.0 0.0 0.0 0.171257