Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00127 ATGGGTTCAGGGTCGTATGGCAACCCTAAAACTTGGATACCATATATGAGCAACAAAGATTGCTCTCAAGGTTTCTGCAGTGTATATTGTCCTCAATGGTGCTATATCATGTTTTCACCTCCACCACCCTTGGAGTTTCCAGATGATAATTCAGGCCCAAATTTTTCACCTCTTGTTATTGCAATTATTGGAATTCTGGCCAGTGCTCTCCTTCTTGTAACCTATTACACCATTATTTCAAAGTATTGTGGCAACACAAACCGTTTGTCTGGAACTGGAAACTATGACCCAAGTGAGGAATACGAAGATAATCACAACCCAACACTTCATGAGCCATGGCATGTTGCCACAACTGGCTTGGATGAAGCACTTATCAAGTCCATTACTGTTTGCAAGTACAAGAGAGGAGATGGGTTGGTTGAAGGCTCTGATTGCTCTGTTTGCCTTAGTGAGTTTCAAGAAGATGAAAGCCTTAGATTGTTGCCTAAATGCAGCCATGCTTTTCATCTTCAATGCATTGATACATGGCTCAAATCACACTCCAATTGTCCCTTATGTCGTGCTAATATCATCTCTATCAATGCTGGTTCTCCAGTTCAACTCCCTGCAAGCACTGCATATCCCATAACTAATGAGACCGTGCCAGAGTCTTCTCAGGATAATGACCACGAGGCTGTTTCACTAGACTCTGGACAAAGTTTTAGCAATGAGGATGCAAAGAACTCCGTTCGCGCTTTCAGCGACCTCGGAAATCTGGAGAAAAGAGATACTACCATTGAGCTTAGAGATGGAAGATTGCAGCAAATTAGAAGGTCAATTTCAATGGATCATTGCAGCCAAAACCGTCTTATTATTGCAGATGTTCTACGTCTAAATGAAGATGAATTTGGAGGTATTGATGAAGCAGGAAGTTCAGGTGATGTTGGATCATCAAAACATTCTGTAGGAGAAGACAGTAGGTCAAGTCATAGAAAAAGAATCTTGCATTGTGTGATGAGTCCTGTTTCAATGAAGAGATCATTTTCAAGTGGAAGACTTTCTCTCACCAAGCATGGGAGAGAACACAGGGGAATTGCTCCTGTCTCATATTTTACAACACAGAATCAGAATGATTTGCAGTTTTGA 1125 41.42 MGSGSYGNPKTWIPYMSNKDCSQGFCSVYCPQWCYIMFSPPPPLEFPDDNSGPNFSPLVIAIIGILASALLLVTYYTIISKYCGNTNRLSGTGNYDPSEEYEDNHNPTLHEPWHVATTGLDEALIKSITVCKYKRGDGLVEGSDCSVCLSEFQEDESLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIISINAGSPVQLPASTAYPITNETVPESSQDNDHEAVSLDSGQSFSNEDAKNSVRAFSDLGNLEKRDTTIELRDGRLQQIRRSISMDHCSQNRLIIADVLRLNEDEFGGIDEAGSSGDVGSSKHSVGEDSRSSHRKRILHCVMSPVSMKRSFSSGRLSLTKHGREHRGIAPVSYFTTQNQNDLQF 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 968387 969887 + MELO3C003420.2.1 Cme04g00127 324388

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00127 374 SMART ring_2 145 186 IPR001841 -
Cme04g00127 374 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 7 354 IPR044675 -
Cme04g00127 374 PANTHER E3 UBIQUITIN-PROTEIN LIGASE OS04G0590900-LIKE 7 354 - -
Cme04g00127 374 SUPERFAMILY RING/U-box 139 193 - -
Cme04g00127 374 MobiDBLite consensus disorder prediction 212 237 - -
Cme04g00127 374 Pfam Ring finger domain 144 187 IPR001841 -
Cme04g00127 374 ProSiteProfiles Zinc finger RING-type profile. 145 187 IPR001841 -
Cme04g00127 374 CDD RING-H2_EL5_like 144 187 - -
Cme04g00127 374 MobiDBLite consensus disorder prediction 299 324 - -
Cme04g00127 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 194 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00127 - - - cmo:103503554 770.385
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00190 Cme-Chr1:1336596 Cme04g00127 Cme-Chr4:968387 3.83E-49 dispersed
Cme04g00127 Cme-Chr4:968387 Cme06g00350 Cme-Chr6:2174320 1.14E-77 dispersed
Cme10g00506 Cme-Chr10:3252685 Cme04g00127 Cme-Chr4:968387 5.44E-28 dispersed
Cme11g01263 Cme-Chr11:19435503 Cme04g00127 Cme-Chr4:968387 1.52E-25 dispersed
Cme11g02546 Cme-Chr11:31857379 Cme04g00127 Cme-Chr4:968387 1.29E-21 dispersed
Cme12g01710 Cme-Chr12:23926529 Cme04g00127 Cme-Chr4:968387 5.00E-24 dispersed
Cme04g00127 Cme-Chr4:968387 Cme08g00747 Cme-Chr8:4978798 3.31E-39 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g679 . . . . . . . Bma14g00158 . . Cma02g01617 . Car02g01377 . . . Cpe05g00173 . . . . . . . . . . . . . . . . . . . . Chy04g00102 . . . Bda07g00092 . . Bpe11g00330 . . Sed02g1537 Cmo02g01662 Cmo19g00246 . . . . . Cpe15g00207 Bhi05g00484 Tan07g1986 Cmetu04g2051 Lac11g2423 Hepe06g1781 . Lcy12g1954 . . . . . . . . Csa03g04600 . Cme04g00127
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001850 2 2 1 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 1 2 4 2 2 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00127 Cme_Chr04 FPKM 2.271429 4.212972 4.686437 9.94616 6.637128 4.052772 4.442611 6.650532 3.618925 3.996409