Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00128 ATGAGTCTTGATGCTCTTTCTTCCAATGACTTGTTCAACTTCATCATCTACGACACGATCTCCGCAACGCCGAACAACTTCGTCCCTCACGGCCATGACTCGTCGGAGAACACTTTCCTATCCGACGACAAGTGCTCGAAACCAAATTCGCGAAAACGCTGCCCCAGTGAGGTAGAGATTAGCAACCGAGTGGTGGTGCCATTGTCTACGACGACGACGACGACGACCACGCAACACGGGAAGAAGAAAAGAAAGAGAAAAGCAAAGGTTTGTAAGAACAAAGAGGAAGCTGAAACACAAAGAATGACACACATTGCTGTTGAAAGGAACCGCCGTAAACAAATGAATGAACATCTTTCGGTTTTACGTTCACTCATGCCCGAATCCTATGTTCAAAGGGGTGACCAAGCCTCCATAGTGGGTGGTGCCGTTGAGTTTGTGAAGGAATTGGAGCATCTTCTGTCAACTTTAGAAGCCAAGAAGCTACAAATCTTACAACAAGAAGTAGATCAACATCAAGAACAAGAGATGAATGAAGATTCAAGGATAAGAAAAAATGATAATAGTGATAATAACAATAAGTTGTTTTCATTTGCAAGTTTATTGATGAATAATTCAGATCAAAATAACTATTCATCCCAATATTCAACAAAATACACATCAAAATCCAAAGCCTCTTCAGCTGATATTGAAGTCACTTTGATTGAAACTCATGCAAATCTTAGAATCCTCTCAACAAGAAGCCATAGACAACTCTTGAAGCTCATTGCTGGTTTGCAAGCACTTCGTCTCACTATTCTTCATCTAAATCTCACTGATTTTCATCCATTGGTTCTTTACTCCATTAGCCTCAAGGTTGAAGAAGGATGCCAACTTAGATCAGTAGATGACATAGCAGCAGCAGCACATCATATGGTAAGAATAATTGAGGAAGAAGCCGTTTTATGTTAA 951 40.59 MSLDALSSNDLFNFIIYDTISATPNNFVPHGHDSSENTFLSDDKCSKPNSRKRCPSEVEISNRVVVPLSTTTTTTTTQHGKKKRKRKAKVCKNKEEAETQRMTHIAVERNRRKQMNEHLSVLRSLMPESYVQRGDQASIVGGAVEFVKELEHLLSTLEAKKLQILQQEVDQHQEQEMNEDSRIRKNDNSDNNNKLFSFASLLMNNSDQNNYSSQYSTKYTSKSKASSADIEVTLIETHANLRILSTRSHRQLLKLIAGLQALRLTILHLNLTDFHPLVLYSISLKVEEGCQLRSVDDIAAAAHHMVRIIEEEAVLC 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 971493 974681 - MELO3C003421.2.1 Cme04g00128 324389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00128 316 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 99 150 IPR011598 GO:0046983
Cme04g00128 316 SMART finulus 105 156 IPR011598 GO:0046983
Cme04g00128 316 MobiDBLite consensus disorder prediction 33 53 - -
Cme04g00128 316 MobiDBLite consensus disorder prediction 36 53 - -
Cme04g00128 316 PANTHER TRANSCRIPTION FACTOR BHLH71 1 315 - -
Cme04g00128 316 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 98 167 IPR036638 GO:0046983
Cme04g00128 316 Coils Coil 147 182 - -
Cme04g00128 316 Pfam Helix-loop-helix DNA-binding domain 100 151 IPR011598 GO:0046983
Cme04g00128 316 PANTHER MAX DIMERIZATION, MAD 1 315 - -
Cme04g00128 316 Gene3D - 90 181 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00128 Cme-Chr4:971493 Cme05g01680 Cme-Chr5:25832469 1.56E-59 dispersed
Cme04g00128 Cme-Chr4:971493 Cme04g00117 Cme-Chr4:902979 2.75E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41127 PF00010 HLH 1.10E-10 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00128 - - csv:101210413 536.954