Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00132 ATGAAATCCGCTCTCCTCCGAACCGGTTCCGTTCCCCTCCTCTCTCCGACCACCACAGCTTCCAACAACAAACAACCGTTGTATGGAGTTTTATCCTGCCACAACAGCTCCGCTTCATCTCCCAGAATCTCTCTACATTGCACACGAAATAATTCTAATCGTATCCGAAGAGCAGCATCGGAGAGCGACATCGTACGATCACTCCACGAGGTTTCCAATACGTCCGATCAATTTAGTGGACTCGCATCTCGATCTCTATCTCGTTCTTTTCCTTCCAAAATTCCAGAGGAGGAGTTTATAGACGAGGATGATCAATTCGACAGTGATTCCATGGAGGAGGATAAAGAATATCTCAATTACCGAGTCGGAGTTAATGATCGTAGTAAGATCGGAGCGTACTACGAACATATGCTGAAATTGAACCCTAGCGACGCTTTATTACTAAGAAACTACGGAAAATTCCTACACGAGGTGGTGAATGATACAAAACGAGCGGAAGAATGTTACAGCAGAGCAATACTAGCAAGTCCAACAGACGGTGAATTACTGGCACTGTACGGGAAATTAGTATGGGACACGGAAAGAGATAAACAAAGAGCTCAATATTACTTCGATCGCGCAGTTTATGCTTCTCCTAACGACTGTTTGGTGACAGGACATTACGCTCATTTCATGTGGCAAGTTGAAGACGATGAGGCTGCTTTGGCGGAGGATTCACCGGCGGGTATGGTAACGGCTTGTTGA 744 45.7 MKSALLRTGSVPLLSPTTTASNNKQPLYGVLSCHNSSASSPRISLHCTRNNSNRIRRAASESDIVRSLHEVSNTSDQFSGLASRSLSRSFPSKIPEEEFIDEDDQFDSDSMEEDKEYLNYRVGVNDRSKIGAYYEHMLKLNPSDALLLRNYGKFLHEVVNDTKRAEECYSRAILASPTDGELLALYGKLVWDTERDKQRAQYYFDRAVYASPNDCLVTGHYAHFMWQVEDDEAALAEDSPAGMVTAC 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 993054 994537 + MELO3C003424.2.1 Cme04g00132 324393

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00132 247 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 232 - -
Cme04g00132 247 SUPERFAMILY TPR-like 132 235 IPR011990 GO:0005515
Cme04g00132 247 Gene3D Tetratricopeptide repeat domain 110 225 IPR011990 GO:0005515
Cme04g00132 247 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 1 232 - -
Cme04g00132 247 MobiDBLite consensus disorder prediction 1 21 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00132 - - - csv:101218835 390.963
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00132 Cme-Chr4:993054 Cme06g00446 Cme-Chr6:2847422 1.04E-12 dispersed
Cme04g00132 Cme-Chr4:993054 Cme01g02605 Cme-Chr1:33738674 9.35E-29 transposed
Cme04g00132 Cme-Chr4:993054 Cme11g02402 Cme-Chr11:30877694 1.58E-28 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g687 . . . . . . Bma07g00922 . . . Cma02g01623 . Car02g01382 . . . Cpe05g00169 . . . . . . . . . . . . . . Cone8ag0479 . . . . . Chy04g00108 . . Blo19g00198 . . Bpe08g00824 . . . Sed01g4122 Cmo02g01668 Cmo19g00241 . . . . . Cpe15g00202 Bhi05g00477 Tan07g1993 Cmetu04g2583 Lac11g2429 Hepe06g1786 . Lcy12g1959 . . . . . . . . Csa03g04595 . Cme04g00132
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009490 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 0 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00132 Cme_Chr04 FPKM 8.409778 7.052976 9.742414 11.914266 14.324139 10.394225 11.583869 19.216375 17.278313 17.890072