Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00133 ATGGAGAAGAAAGGGGATATGAATGTGGTTGGTAAGATGGGTAAGTTTCAATTGAGTTTTTGGGAGTTGGGTGTGTTTACAACTGTTGTTTTTGCCTTCCTTTCCGGCCTTCTCTGTGTTTACCTAACCATGCCGGCCTCCGATTACAGCTTCCTCAAGCTTCCTCGTAACCTTCAAGATCTTCAGATTCTCAGAGATCACCTTGAGGAATATACAAGTGACTACACTGCACAGGTCTTGGTTGGATACTGCGTGGTCTACATCTTTATGCAAACCTTCATGATACCTGGAACGGTTTTCATGTCACTGCTTGCTGGAGCCCTCTTCGGAGTCTTCAAGGGCGTTGCTCTTGTCGTTTTCACTGCTACGGCCGGAGCTTCCTCGTGCTATTTCCTCTCGAAGATGATTGGGAAGCCCCTCGCCTTTACTCTTTGGCCCGACAAGGTGAAGTTCTTTCAAGATCAGGTTTCTAAGAGAAGGAAAAAGCTGTTGAACTACATGCTTTTTCTAAGATTGACTCCAACCTTGCCAAATACATTCATCAATGTTGCATCTCCAATTGTCGACGTGCCTTACCATACCTTCTTCCTCGCTACCGTGGTTGGTCTCATCCCGGCTGCCTATGTTACAGTCAGGGCTGGATTGGCGCTCGGAGAATTGCGATCGGTTGGTGATCTTTACGACTTCAACTCGATCGCCACATTGTTTCTTATTGGAATTGTCTCGGTGACACCAACTTTAGTTGGCAAGAGTAAATCATAA 762 46.06 MEKKGDMNVVGKMGKFQLSFWELGVFTTVVFAFLSGLLCVYLTMPASDYSFLKLPRNLQDLQILRDHLEEYTSDYTAQVLVGYCVVYIFMQTFMIPGTVFMSLLAGALFGVFKGVALVVFTATAGASSCYFLSKMIGKPLAFTLWPDKVKFFQDQVSKRRKKLLNYMLFLRLTPTLPNTFINVASPIVDVPYHTFFLATVVGLIPAAYVTVRAGLALGELRSVGDLYDFNSIATLFLIGIVSVTPTLVGKSKS 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 995418 998131 - MELO3C003425.2.1 Cme04g00133 324394

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00133 253 Pfam SNARE associated Golgi protein 95 214 IPR032816 -
Cme04g00133 253 PANTHER - 9 252 IPR045014 -
Cme04g00133 253 PANTHER SNARE ASSOCIATED GOLGI PROTEIN-RELATED 9 252 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00133 - - - csv:101211146 494.582
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00055 Cme-Chr3:810348 Cme04g00133 Cme-Chr4:995418 4.70E-106 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g691 . . . . . . Bma07g00921 Bma14g00161 . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0480 Cone12ag0475 . . . . Chy04g00109 . . Blo19g00199 Bda07g00089 . . Bpe11g00326 . . Sed01g4123 . Cmo19g00240 . . . . . Cpe15g00201 Bhi05g00476 Tan07g1994 Cmetu04g3095 Lac11g2430 Hepe06g1787 . Lcy12g1960 Cla09g01108 Cam09g1162 Cec09g1170 Cco09g1185 . . Cre09g1123 . Csa03g04593 . Cme04g00133
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008794 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 0 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00133 Cme_Chr04 FPKM 11.593108 13.24152 14.773767 15.121001 22.026497 22.427887 21.745392 30.604309 26.630337 26.776836