Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00134 ATGGCGGAAATCGGACGGAGATTTTGTATCGGCTATGCACTTTTGCCGAAGAAGCGGCGGAGTTTCATACGAGAGTCCTTGCTCAGGCTTGCTGAATCAAAAGGTATCGATTTTGTGAGGATCGATATGGACAAGCCGCTTGTTGATCAAGGAGCCTTTGATTGTGTTCTCCACAAGCTCTATAGTGCGGATTGGAGGAAGCAACTCGAGAATTTTAGGGTTCTTAACCCTAATGTGGTAATTTTGGACTCACTCGACGCCATTGAGAGGCTTCACAACCGGATTTCTATGCTTCAGGTGGTGTCCGAGCTGAAGATTGAGAATCACGATGAATCGTTCGGGATTCCGGAGCAGATTGTGATTTACGATATGGAGAACCTTTCTGATCGGCGTGCTTGGGAGACGTTGAAGTTTCCGGTCGTTGCAAAGCCCTTGGTGGCTGATGGAAGTGCTAAATCGCATAAAATGGCGCTTGTGTTTAATCACGACGGTTTGAACAAGCTTAAACCTCCTATTGTATTGCAAGAGTTTGTCAACCACGGTGGAGTTATTTTCAAGGTTTATGTAGCTGGAAATCATGTGAAATGCGTCAAGAGAAAGTCACTTCCGGACATTTCTGAGGAGAAATTAGAAAGTGTCGAGGATTTGCAATCGTTTTCTCAGGTATCGAATCTGACGAACCATGACAGAGTTGATGAAAAGTATTATCAAATGATGCAGTTAGACGACACTGAGATGCCGCCGTTGAGCTTCGTCACCGATATAGCCAAAGGATTGAGACATGCGTTGAAGCTTAACCTCTTCAATTTCGATATGATGCGGGATTCAAGAAACAAGAACCGTTATCTCATAGTTGATATCAATTACTTTCCTGGGTTTGCGAAGATGCCAGGATATGAGAAGATTGTAACGGATTTCCTATCTGATATAATGAGGAGGAAAGACAGAGAGCTCGTAAAAGCTTGGTTTGAACATGATGCTTCAGACCCCATTGCCTTCGATAAAAGGCAAGTGCATAATTGTGAAAATGATTCTAGAAATGTTGTGATGCTTACTTGCATCGGTAATGGGGATGGTGGAGGTTGA 1086 43.65 MAEIGRRFCIGYALLPKKRRSFIRESLLRLAESKGIDFVRIDMDKPLVDQGAFDCVLHKLYSADWRKQLENFRVLNPNVVILDSLDAIERLHNRISMLQVVSELKIENHDESFGIPEQIVIYDMENLSDRRAWETLKFPVVAKPLVADGSAKSHKMALVFNHDGLNKLKPPIVLQEFVNHGGVIFKVYVAGNHVKCVKRKSLPDISEEKLESVEDLQSFSQVSNLTNHDRVDEKYYQMMQLDDTEMPPLSFVTDIAKGLRHALKLNLFNFDMMRDSRNKNRYLIVDINYFPGFAKMPGYEKIVTDFLSDIMRRKDRELVKAWFEHDASDPIAFDKRQVHNCENDSRNVVMLTCIGNGDGGG 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1004171 1005705 + MELO3C003426.2.1 Cme04g00134 324395

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00134 361 PANTHER INOSITOL-TETRAKISPHOSPHATE 1-KINASE 5 332 - -
Cme04g00134 361 ProSiteProfiles ATP-grasp fold profile. 105 316 IPR011761 GO:0005524|GO:0046872
Cme04g00134 361 PIRSF ITPK 1 321 IPR008656 GO:0000287|GO:0005524|GO:0032957|GO:0047325|GO:0052725|GO:0052726
Cme04g00134 361 Pfam Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain 108 308 IPR040464 -
Cme04g00134 361 Gene3D - 84 292 - -
Cme04g00134 361 Pfam Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain 10 88 IPR041429 -
Cme04g00134 361 PANTHER INOSITOL-TETRAKISPHOSPHATE 1-KINASE 5 332 IPR008656 GO:0000287|GO:0005524|GO:0032957|GO:0047325|GO:0052725|GO:0052726
Cme04g00134 361 SUPERFAMILY Glutathione synthetase ATP-binding domain-like 84 295 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00134 K00913 ITPK1; inositol-1,3,4-trisphosphate 5/6-kinase / inositol-tetrakisphosphate 1-kinase [EC:2.7.1.159 2.7.1.134] - csv:101211396 704.901
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme04g00134 Cme06g02458 CCT
Cme04g00134 Cme06g02458 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00177 Cme-Chr1:1239902 Cme04g00134 Cme-Chr4:1004171 6.98E-18 dispersed
Cme03g01769 Cme-Chr3:26169297 Cme04g00134 Cme-Chr4:1004171 3.92E-88 dispersed
Cme04g00134 Cme-Chr4:1004171 Cme11g00563 Cme-Chr11:6024989 6.41E-100 dispersed
Cme04g00134 Cme-Chr4:1004171 Cme06g02458 Cme-Chr6:31604508 1.81E-175 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g692 . Blo03g00058 . . . . Bma07g00920 Bma14g00162 . Cmo16g01222 . . . . Sed02g0062 Cpe14g00971 . Bhi11g00019 Tan01g2207 Cmetu01g2686 . . Mch10g1676 . Cla10g00145 Cam10g0140 Cec10g0150 Cco10g0150 Clacu10g0144 Cmu10g0991 Cre10g0402 . Cone5ag0619 . . Lsi07g01180 . Chy04g00110 Cme06g02458 Blo03g00871 Blo19g00200 Bda07g00088 . Bpe08g00823 Bpe11g00325 . . . . Cmo19g00239 . Cma16g01172 . Car16g01105 . Cpe15g00200 Bhi05g00470 . . Lac11g2433 . . . Cla09g01107 Cam09g1161 Cec09g1169 Cco09g1184 . . Cre09g1122 . Csa03g04592 Chy06g02155 Cme04g00134
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001652 2 8 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 3 2 2 2 2 3 2 1 2 2 2 2 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00134 Cme_Chr04 FPKM 0.686627 0.0 0.184027 0.0 0.0 0.0 0.162016 0.0 0.0 0.0