Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00136 ATGAGAAACCATGGATCTTCGGTTTCATATCATGAACGTCATGAAGAAGAAAACGAAGAACGTAATATGAAAAAGAGGAAGAATGATGAAGAAGGAGATGATGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGTGAAAAAGATGAAGACGAAGAAGAAGAAGAAGAAGAAACAAGAAAAGAATAACAATAAAGTAGCATTTTATAAGTTATTTGCATTTGCTGATTTTTATGATTATATTCTAATGAGTATTGGTTCAATTGGAGCTTGTATCCATGGTGCTTCTGTTCCTGTCTTCTTCATTTTCTTTGGAAAACTCATTAATATTATTGGTATGGCTTATCTCTTCCCTGAGGCTGCTGCTCCCAAAGTTGCTAAGTACTCTTTGGACTTTTTATATCTCAGTGTGGCAATACTATTTTCATCATGGGCAGAGGTGGCTTGTTGGATGCACAGTGGAGAAAGGCAAGCAGCAAAAATGAGAATGGCATATCTAAAATCAATGTTGAATCAAGACATTAGTCTTTTCGACACTGAAGCTTCTACTGGTGAAGTTATTGCTGCTATTACTAGTGACATTGTTGTTGTTCAAGATGCCATTTCTGAAAAAGTAGGGAACTTTTTGCATTACATAAGCCGGTTTATATCAGGATTTATCATTGGATTTGTGAGAGTATGGCAAATCAGTCTTGTCACATTATCTATTGTCCCTTTGATTGCACTTGCTGGTGGTCTCTATGCTTTTGTCACCATTGGTCTTATTGCCAAAGTAAGAAAATCCTATGTCAAGGCTGGTGAGATCGCTGAAGAGATTCTAGGAAATGTTAGAACAGTTCAAGCATTTGCTGGGGAAGAGAGGGCCGTAAATTTGTACAAAGGAGCTCTCAAGAATACCTACAAATATGGTAGAAAAGCAGGGCTGGCTAAGGGACTGGGCCTGGGATCAATGCATTGTGTCCTTTTCTTGTCATGGGCTCTGTTGGTTTGGTTTACCAGCATTGTTGTTCACAAGGGCATTGCCAACGGTGGAGACTCCTTCACCACAATGCTTAATGTTGTCATTTCTGGCTTGTCACTTGGGCAGGCTGCTCCAGACATTTCCGCCTTTGTTCGAGCAAAGGCAGCAGCCTATCCTATTTTTCAGATGATAGAGAGGAACACAGTAAGCAAAAGCAGCTCCAAAACTGGCCGGAAGCTGAATAAGCTTGATGGTTATATTCAATTCAAGGATGTTAATTTCAGCTACCCATCTCGTCCGGATGTAATTATATTTAATAAGTTATCTCTTGACATTCCTGCTGGCAAGATTGTAGCTCTTGTAGGAGGAAGTGGATCAGGAAAGAGCACGGTGATATCTTTGATCGAACGATTCTATGAACCCCTTTCTGGAGAGATTCTATTAGATGGTCATAACATCAAGGAGCTGGACCTTAAGTGGTTTAGGCAACAAATTGGTTTGGTCAATCAAGAACCTGCCCTCTTCGCTACAAGCATTAGGGAGAACATTCTATATGGAAAAGATGATGCTACCCTCGAGGACATCACACGTGCTGCAAAACTTTCTGAGGCTTTATCGTTTATAAACAATCTCCCTGAAAGATTTGAAACTCAGGTTGGTGAGAGAGGGGTCCAATTATCAGGGGGACAAAAACAAAGGATTGCAATATCCCGTGCAATCGTTAAAAATCCATCAGTCTTGTTGTTGGACGAGGCAACAAGTGCACTAGATGCAGAATCTGAAAAGAGTGTTCAAGAGGCACTCGATCGTGTCATGGTTGGTCGAACGACTGTAGTGGTGGCTCATCGTCTATCTACCATAAGAAATGCAGATGTGATTGCAGTCGTTCAAGAGGGGAAGATAGTTGAAACCGGAAGCCATGATGAGCTCATTTCAAGGCCAGACAGTGTCTATGCATCACTTGTCCAATTCCAAGAAACAGCATCTCTGCAACGACATCCCTCGTTTGGACAGTTGGGTCGACCACCTAGTATAAAGTACTCTCGAGAATTATCTCGCACTACAACGAGCTTTGGTGCAAGTTTTCGCTCTGAGAAAGAATCTCTTGGACGGATTGGAGTTGATGGAATGGAAATGGAGAAACCAAGGCATGTTTCAGCAAAAAGACTCTACTCCATGGTTGGACCGGATTGGATGTATGGCATTGTCGGCGTCATTGGAGCATTTGTTACGGGATCCCAGATGCCCCTGTTTGCTCTTGGGGTCTCTCAGGCTCTTGTTGCTTTTTACATGGACTGGGATACAACTCAACATGAGATCAAGAAAATTTCTTTGCTTTTCTGTGGCGGTGCAGTTTTAACTGTCATTTTTCATGCAGTTGAGCATCTTTGTTTTGGAATTATGGGAGAGCGACTTACTCTTCGAGTTCGAGAAATGATGTTCCATGCTATTTTGAGGAACGAGATAGGATGGTTTGATGATATGAACAACACAAGTGCTATGCTTTCATCGCGTTTAGAAACTGATGCAACTTTATTACGAACTATCGTTGTCGACCGCTCTACAATTCTTCTGCAGAATCTTGCTTTGGTCGTTGCATCATTCATCATTGCTTTTATATTGAATTGGCGAATCACTCTAGTTGTCCTGGCCACTTATCCATTGATCATCAGTGGTCACATTAGCGAGAAACTTTTTATGCAAGGCTATGGTGGAAATTTGAGCAAAGCATACCTGAAAGCCAATACACTGGCCGGTGAGGCAGTTGGCAACATTAGAACTGTTGCTGCATTTTGTTCTGAGGAGAAGGTCCTTGATCTATATGCTAAGGAGCTCGTTGAGCCCTCAAGACGTTCGCTTAAACGTGGACAGATTGCTGGAATATTCTATGGTGTCTCTCAGTTCTTCATCTTTTCATCTTACGGTCTAGCCTTATGGTACGGTTCGGTCTTGATGGGACAGGGGCTTGCTAGCTTCAAGTCAGTTATGAAATCATTCATGGTTTTGATAGTAACTGCCTTAGCAATGGGTGAAACTTTGGCACTGGCTCCTGACCTTTTAAAGGGAAACCAAATGGTGGCATCAGTGTTTGAGGTGATGGATCGACAGACAGAGGTACCAGGCGATGTGGGTGAAGAGCTAAATGTGGTGGAGGGTACCATTGAGCTGAGGAATGTTGAGTTCGTCTATCCATCAAGACCAGATGTTATGATCTTCAAAGATTTCAATCTTAAAGTGAGAGCAGGCAAGAGTATAGCCTTAGTTGGCCAAAGCGGATCAGGAAAAAGCTCGGTTCTAGCTCTTATACTGCGATTTTACGATCCAATTGCTGGGAAGGTGATGATTGATGGAAAAGATATTAAAAAACTGAAGCTCAAATCTCTCAGAAAGCACATTGGCCTCGTCCAACAAGAACCAGCTCTTTTCGCCACGACAATTTACGAGAACATTCTTTACGGGAAAGAAGGAGCATCAGAAGCCGAAGTATTCGAAGCAGCGAAACTCGCCAATGCTCATAACTTCATCAGCGCTCTTCCTGAAGGCTACTCAACAAAAGTTGGTGAAAGAGGGATACAACTCTCTGGTGGGCAACGACAAAGGATCGCCATTGCAAGAGCAGTCCTGAAGAACCCTGAAATACTATTACTCGACGAAGCAACAAGTGCTCTGGATGTCGAATCGGAACGTGTGGTTCAACAAGCCTTAGACAGATTGATGATGAACAGAACAACTGTGGTGGTTGCACATAGGCTTTCCACCATTAAAAACTGTGATCAAATCTCAGTGATTCAAGATGGTAAAATAGTAGAACAAGGGACACATTCAAGCCTATCTGAGAACAAAAATGGAGCTTATTACAAGTTAATCAACATCCAACAACAGCAACAAAGACAGTAG 3861 42.06 MRNHGSSVSYHERHEEENEERNMKKRKNDEEGDDDEEEEEEEEEEDVKKMKTKKKKKKKQEKNNNKVAFYKLFAFADFYDYILMSIGSIGACIHGASVPVFFIFFGKLINIIGMAYLFPEAAAPKVAKYSLDFLYLSVAILFSSWAEVACWMHSGERQAAKMRMAYLKSMLNQDISLFDTEASTGEVIAAITSDIVVVQDAISEKVGNFLHYISRFISGFIIGFVRVWQISLVTLSIVPLIALAGGLYAFVTIGLIAKVRKSYVKAGEIAEEILGNVRTVQAFAGEERAVNLYKGALKNTYKYGRKAGLAKGLGLGSMHCVLFLSWALLVWFTSIVVHKGIANGGDSFTTMLNVVISGLSLGQAAPDISAFVRAKAAAYPIFQMIERNTVSKSSSKTGRKLNKLDGYIQFKDVNFSYPSRPDVIIFNKLSLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGHNIKELDLKWFRQQIGLVNQEPALFATSIRENILYGKDDATLEDITRAAKLSEALSFINNLPERFETQVGERGVQLSGGQKQRIAISRAIVKNPSVLLLDEATSALDAESEKSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQEGKIVETGSHDELISRPDSVYASLVQFQETASLQRHPSFGQLGRPPSIKYSRELSRTTTSFGASFRSEKESLGRIGVDGMEMEKPRHVSAKRLYSMVGPDWMYGIVGVIGAFVTGSQMPLFALGVSQALVAFYMDWDTTQHEIKKISLLFCGGAVLTVIFHAVEHLCFGIMGERLTLRVREMMFHAILRNEIGWFDDMNNTSAMLSSRLETDATLLRTIVVDRSTILLQNLALVVASFIIAFILNWRITLVVLATYPLIISGHISEKLFMQGYGGNLSKAYLKANTLAGEAVGNIRTVAAFCSEEKVLDLYAKELVEPSRRSLKRGQIAGIFYGVSQFFIFSSYGLALWYGSVLMGQGLASFKSVMKSFMVLIVTALAMGETLALAPDLLKGNQMVASVFEVMDRQTEVPGDVGEELNVVEGTIELRNVEFVYPSRPDVMIFKDFNLKVRAGKSIALVGQSGSGKSSVLALILRFYDPIAGKVMIDGKDIKKLKLKSLRKHIGLVQQEPALFATTIYENILYGKEGASEAEVFEAAKLANAHNFISALPEGYSTKVGERGIQLSGGQRQRIAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMMNRTTVVVAHRLSTIKNCDQISVIQDGKIVEQGTHSSLSENKNGAYYKLINIQQQQQRQ 1286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1017562 1025313 - MELO3C003428.2.1 Cme04g00136 324397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00136 1286 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 65 1281 IPR039421 -
Cme04g00136 1286 Gene3D - 1033 1286 IPR027417 -
Cme04g00136 1286 CDD ABC_MTABC3_MDL1_MDL2 1042 1277 - -
Cme04g00136 1286 SMART AAA_5 435 627 IPR003593 -
Cme04g00136 1286 SMART AAA_5 1069 1241 IPR003593 -
Cme04g00136 1286 Pfam ABC transporter 427 575 IPR003439 GO:0005524
Cme04g00136 1286 MobiDBLite consensus disorder prediction 1 31 - -
Cme04g00136 1286 Pfam ABC transporter 1061 1209 IPR003439 GO:0005524
Cme04g00136 1286 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 400 646 IPR027417 -
Cme04g00136 1286 PANTHER ABC TRANSPORTER B FAMILY MEMBER 2 65 1281 - -
Cme04g00136 1286 CDD ABC_MTABC3_MDL1_MDL2 408 646 - -
Cme04g00136 1286 Coils Coil 13 60 - -
Cme04g00136 1286 ProSitePatterns ABC transporters family signature. 547 561 IPR017871 GO:0005524
Cme04g00136 1286 Gene3D ABC transporter type 1, transmembrane domain 133 1011 IPR036640 GO:0005524|GO:0016021
Cme04g00136 1286 Gene3D ABC transporter type 1, transmembrane domain 25 117 IPR036640 GO:0005524|GO:0016021
Cme04g00136 1286 SUPERFAMILY ABC transporter transmembrane region 72 378 IPR036640 GO:0005524|GO:0016021
Cme04g00136 1286 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 723 1009 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cme04g00136 1286 Gene3D - 406 659 IPR027417 -
Cme04g00136 1286 Pfam ABC transporter transmembrane region 87 356 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cme04g00136 1286 Pfam ABC transporter transmembrane region 723 995 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cme04g00136 1286 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 408 644 IPR003439 GO:0005524
Cme04g00136 1286 CDD ABC_6TM_Pgp_ABCB1_D1_like 84 381 - -
Cme04g00136 1286 MobiDBLite consensus disorder prediction 1 58 - -
Cme04g00136 1286 CDD ABC_6TM_Pgp_ABCB1_D2_like 712 1027 - -
Cme04g00136 1286 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1036 1280 IPR027417 -
Cme04g00136 1286 ProSitePatterns ABC transporters family signature. 1181 1195 IPR017871 GO:0005524
Cme04g00136 1286 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1042 1278 IPR003439 GO:0005524
Cme04g00136 1286 SUPERFAMILY ABC transporter transmembrane region 701 1024 IPR036640 GO:0005524|GO:0016021
Cme04g00136 1286 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 86 373 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02785 Cme-Chr1:34895480 Cme04g00136 Cme-Chr4:1017562 0 dispersed
Cme03g00873 Cme-Chr3:16581383 Cme04g00136 Cme-Chr4:1017562 7.69E-16 dispersed
Cme04g00136 Cme-Chr4:1017562 Cme08g00181 Cme-Chr8:1240462 5.58E-137 dispersed
Cme04g02508 Cme-Chr4:31424745 Cme04g00136 Cme-Chr4:1017562 1.93E-88 dispersed
Cme04g02513 Cme-Chr4:31442971 Cme04g00136 Cme-Chr4:1017562 2.18E-24 dispersed
Cme09g00570 Cme-Chr9:5830550 Cme04g00136 Cme-Chr4:1017562 7.62E-90 dispersed
Cme10g00604 Cme-Chr10:3862113 Cme04g00136 Cme-Chr4:1017562 2.30E-104 dispersed
Cme04g00136 Cme-Chr4:1017562 Cme09g00284 Cme-Chr9:2201844 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00136 K05658 - csv:101219304 2284.99