Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00137 ATGAGAAAGTCCGGAAGAGGAGGCCGGTGGACTGATCACAATCGAAACCAAGAGGTTTGGGTTGCCAAACACACGAATCATTCACACAATCACGCTTCTTCTTCCGCCTCACAACCCTCCCACCTCTCTAATCCTCCTCCTACCGGTCGTAATTTCAGTTACGAGCATCGCCATCCCCGCCGCCCCCGTCCCCAACCTGTCCACAAACCGGAGGTCACTTCTCTGGCCGATGGAATAGAATCTTTCACTTTCGACGAAAAGCCTGTGGACTTCGATGTTGCGAAACCTAACTGTGAGGTTAAACAACAGACACCTGGAAATTCTTCCTCAGCTGAGGCTGCGGATGATGTTTATAGTAGGTTAGAGATGCTGCAGCGGAGTTCCGAGGAGCCGGTGTTGTCGGAGGAGCAGCTCAGTATTAATGATCAGTTGCAGGAAGATGAGTTGCTGGCTTTGGAGTCCATATATGGAGAAAATGTCTATATCCTCGATGAATATAAAGGGCAGCGCCGTTTCCAGATTTTCATACACATTGAGAATCCTGGCGATATTACTATAACTGCAAAGCTTAATTCATCTAGTTCCCTTGAGATCAAAAGTCCTAATTCAGATGAATTCTCCTGTTCTTTCAATGTCAAGTATCTTAACCCCATTGTTTTGACTTGTTTATTACCAAAATCGTATCCTAGTCATCTTCCTCCATATTATACAATCTCTATTCGGTGGTTGGACTCTGCTAGAATTTCTAGGCTTTGCTCTGTGTTGGATGGGATATGGAGTGAACAAGTGGGCCAGGAAGTTGTATATCAATGGGTAGAATGGCTACAAATGTCATCTCTGGCTTATCTTCAGTTAGATAAAGAGATTATGCTTGGTCCGTACGATAAGGGACATTCAGGAGATACTCGGGCAGTTTCAGGAAGTGTTTCTCCAGAAGTTGATATTCCTGCTATTATAAATTATGACAATCAGAGACGTGATGAGGAATTCTGCATGAATTTGCAAGAGTGCTGCATCTGTTTAAGTCAGTTTGCAGGTACGAAGTTTGTTAAATTGCCATGTAAACATTACTTTTGCTGGAAGTGCATGGAGACATACTCGAGCATGCATGTCAAGGAAGGCACAGTAAGCAAACTCAATTGCCCAGATGCCAAATGTGATGTTATGGTTCCTCCTGGTCTTCTGAAGCAATTGCTTGGCGATGAGGAGTTTGAAAGATGGGAATCCATGATGCTCACGAAAACACTGGAATCGATGTCAGATGTTGTCTATTGCCCAAGGTGTGAAACACCCTGCCTAGAGGATGTCGATCATGATGCCCAATGCTCTAAGTGTTACTTCAGTTTTTGTACACTCTGTAGCGAGCGACGTCATGTCGGAATTGAATGTATGACTCCAGAAATGAAGCTTCGTCTTCTTGAGGAGCGTCAAAATTCATCTCAGTTAGGCAGCGAACAAAGAAGAAAGGAGCGTGAGATGATAAATGAGCTTATTAGTGTCAAGGAAATACTTCGTGATGCCAAGCAATGCCCATCTTGTAAAATGGCAATATCACGGACCGAGGGTTGCAATAAGATGGTTTGCAATAACTGTGGACAGTATTTCTGTTACCGCTGTAGCAAGGCAATTGATGGATATGACCATTTCAGGGAGGGATCATGTGAATTGTTCCCGCAAGAAGCCATTCAACAGTGGGAAGAGCGCATGAATGCACGGCAGGTATTGGGCCAGATTCAAGCTGAACTTTTTCCTGAAAATGGTCGTCCATGTCCTAATTGTGGTCAACTTAATGCCAAGGTTGGGAATAACAATCACATACGTTGTTGGTCATGTCAAATCCACTACTGCTATTTATGTAGAAAAGCTGTGAAACGCAGCTCCCAACATTATGGACCCAAAGGATGCAAACAACACACAGTGGGTTGA 1926 44.08 MRKSGRGGRWTDHNRNQEVWVAKHTNHSHNHASSSASQPSHLSNPPPTGRNFSYEHRHPRRPRPQPVHKPEVTSLADGIESFTFDEKPVDFDVAKPNCEVKQQTPGNSSSAEAADDVYSRLEMLQRSSEEPVLSEEQLSINDQLQEDELLALESIYGENVYILDEYKGQRRFQIFIHIENPGDITITAKLNSSSSLEIKSPNSDEFSCSFNVKYLNPIVLTCLLPKSYPSHLPPYYTISIRWLDSARISRLCSVLDGIWSEQVGQEVVYQWVEWLQMSSLAYLQLDKEIMLGPYDKGHSGDTRAVSGSVSPEVDIPAIINYDNQRRDEEFCMNLQECCICLSQFAGTKFVKLPCKHYFCWKCMETYSSMHVKEGTVSKLNCPDAKCDVMVPPGLLKQLLGDEEFERWESMMLTKTLESMSDVVYCPRCETPCLEDVDHDAQCSKCYFSFCTLCSERRHVGIECMTPEMKLRLLEERQNSSQLGSEQRRKEREMINELISVKEILRDAKQCPSCKMAISRTEGCNKMVCNNCGQYFCYRCSKAIDGYDHFREGSCELFPQEAIQQWEERMNARQVLGQIQAELFPENGRPCPNCGQLNAKVGNNNHIRCWSCQIHYCYLCRKAVKRSSQHYGPKGCKQHTVG 641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1029807 1034063 + MELO3C003429.2.1 Cme04g00137 324398

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00137 641 MobiDBLite consensus disorder prediction 1 72 - -
Cme04g00137 641 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 333 420 IPR013083 -
Cme04g00137 641 ProSiteProfiles RWD domain profile. 147 282 IPR006575 GO:0005515
Cme04g00137 641 MobiDBLite consensus disorder prediction 1 25 - -
Cme04g00137 641 SUPERFAMILY RING/U-box 405 467 - -
Cme04g00137 641 ProSiteProfiles Zinc finger RING-type profile. 337 385 IPR001841 -
Cme04g00137 641 SMART ibrneu5 492 554 IPR002867 -
Cme04g00137 641 SMART ibrneu5 405 463 IPR002867 -
Cme04g00137 641 SMART ibrneu5 563 635 IPR002867 -
Cme04g00137 641 SUPERFAMILY RING/U-box 580 637 - -
Cme04g00137 641 SUPERFAMILY RING/U-box 334 418 - -
Cme04g00137 641 ProSiteProfiles TRIAD supradomain profile. 333 559 IPR044066 -
Cme04g00137 641 SUPERFAMILY UBC-like 141 276 IPR016135 -
Cme04g00137 641 SUPERFAMILY RING/U-box 496 549 - -
Cme04g00137 641 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 112 581 IPR031127 GO:0004842|GO:0016567
Cme04g00137 641 Gene3D - 484 582 - -
Cme04g00137 641 SMART ring_2 510 593 IPR001841 -
Cme04g00137 641 SMART ring_2 337 384 IPR001841 -
Cme04g00137 641 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 112 581 - -
Cme04g00137 641 ProSitePatterns Zinc finger RING-type signature. 354 363 IPR017907 -
Cme04g00137 641 Pfam IBR domain, a half RING-finger domain 502 543 IPR002867 -
Cme04g00137 641 Pfam IBR domain, a half RING-finger domain 405 463 IPR002867 -
Cme04g00137 641 Gene3D Ubiquitin Conjugating Enzyme 134 285 IPR016135 -
Cme04g00137 641 MobiDBLite consensus disorder prediction 26 50 - -
Cme04g00137 641 Pfam RWD domain 143 277 IPR006575 GO:0005515
Cme04g00137 641 SMART RWD2001b 147 282 IPR006575 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00137 K11971 RNF14, ARA54; E3 ubiquitin-protein ligase RNF14 [EC:2.3.2.31] - csv:101211646 1264.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00137 Cme-Chr4:1029807 Cme05g01015 Cme-Chr5:14651663 1.02E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g699 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00114 . Blo03g00874 . Bda07g00086 . . Bpe11g00323 . . Sed01g4129 . Cmo19g00236 . . . . . Cpe15g00198 Bhi05g00464 Tan07g2001 Cmetu04g1279 Lac11g2439 Hepe06g1792 . Lcy12g1964 Cla09g01103 Cam09g1156 Cec09g1165 Cco09g1180 . . Cre09g1118 . Csa03g04588 . Cme04g00137
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011677 1 1 1 0 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00137 Cme_Chr04 FPKM 27.628384 29.752766 24.339428 25.155958 23.372149 23.215792 23.746502 22.748276 22.515776 24.182673