Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00141 ATGGAAAGTAATATCAATAATAATGATAATATTACTCAGCAAAATCAGAAGAAAAAACGCTATCATAGACATACTGCTCGCCAGATCCAAGAAATGGAAGCGTTATTTAAGGAATGTCCACACCCAGATGACAAGCAAAGGCTAAAACTCAGCCAGGAACTTGGCCTCAAACCTCGCCAAGTTAAATTTTGGTTCCAAAATCGTAGAACCCAAATGAAGGCACAACAAGATAGATCCGATAACGTGATACTTAGGGCAGAAAATGAGACATTAAAGAATGAGAATTATAGATTACAAAGTGCCCTAAGAAACATAATATGCCCAAGCTGTGGAGGGCAGGGTATCCTTGGTGAACCAAGCTTGGATGAACAACAACTACGTCTTGAGAATGCTAGACTTAGAGATCAGTTGGAACAAGTATGCTCCATGACCACAAGATACACTGGGCGCCCAATCCAAGCAATGGCATCCACAGCTCCTCCTCTTATGCAACCATCTTTGGATTTGGACATGAACATATACTCAAGACAATACACTGAGGCCATGGTTCCGTCCTCCGAAATGATGGCGTTGCCCTCGATGCTCCCACCTGAGGCCGCCCACTTCCCAGAAGGGGGTCTATTAATTGAGGAGGAGAAAACACTTGCAATGGACCTTGCTGTTTCGTCCATAGCTGAACTTGTGAAGATGTGTCGCTTGACTGAGCCTCTTTGGGTTCGAGACAACGAGAGCGGTAAGGAAATTCTAAATGTTGAAGAGCATGGGAGGATGTTTCCATGGCCATTGAACCTCAAGCAACACTTAATCAATGAGTTTAGGACCGAGGCAACACGTGATAGCGCAGTAGTTATAATGAATAGCATCACTCTTGTCGACGCCTTTCTCGATGCTAACAAATGGATGGAATTGTTTCCTTCAATTGTGGCCAAAGCAAAGACTGTGCAAGTGATTTCATCAAGTGTTTCAGGCCATGCCACTTCTTCCCTTCAGCTGATGTATGCGGAACTTCAGACACTTTCTCCTCTAGTTCCGACGAGAGAAGCACATTTTCTCCGGTGCTGCCAACAGAATGCCGACGAAGGAAGCTGGACCGTCGTTGATTTTCCGATTGATAGCTTCCATGACAGTCTTCAGCACTCATTTCCCAGATACAGAAGAAAGCCCTCTGGCTGTATTATTCAAGACATGCCCAATGGATATTCTAGGGTTACATGGGTGGAGCATGCAGAGATAGAAGAGAAGCCAATCCATCAAATATTCGATCATTTTGTGCATAGTGGAATGGCTTTTGGGGCACATCGTTGGTTGGCCATTTTACAAAGACAATGTGAGAGAATTGCAAGTCTCATGGCTAGAAATATTTCTGACCTTGGAGTAATACCTTCACCCGAGGCAAGACAAAACCTAATGAAACTGGCACAAAGAATGATCAGAACTTTCTCTGTCAACATAAGCACCTCCGGTGGCCAGTCGTGGACGGCGTTATCGGATTCTCCCGAGGATACTGTTCGTATAACCACTCGAAAAGTTGTCGAGCCTGGCCAACCCAATGGGGTTATTCTTAGCGCTGTCTCCACTACTTGGCTTCCTTATCCTCACTATCGAGTCTTCGATCTTCTACGAGACGAACGACGACGTTCTCAGTTGGAGGTTCTTTCGAATGGGAATTCCTTGCATGAAGTTGCTCACATTGCTAATGGCTCTCACCCTGGAAATTGCATCTCCCTTCTTCGTATCAATGTGGCCAGCAACTCCTCCCAACATGTTGAGCTGATGCTGCAGGAGAGTTGCACGGACCAATCTGGCAGTCTCGTCGTCTACGCAACAATTGACGTTGATTCAATTCAATTAGCAATGAGCGGAGAAGACCCCTCCTGCATTCCCCTCCTCCCCATAGGATTTTCCATCGTCCCCATCCTCGGTTCAACCGTCGACGGACATCCAGCACCGCCACCCGATGATGGTACTCCAAATGCCAACTCTGGTTGCCTCCTCACCGTTGGCTTACAAGTTCTAGCCAGCACCATTCCATCCGCAAAGCTCAACTTATCAAGTGTAACTGCCATCAACAACCACCTCTGTAACACGGTGCACCAAATCAACATTGCTCTCGGCGGCCCAGGTCGTTTGGAGAACGACAATAATGTCGTGGCTGAGCCGAATAATCCACCGACACCCCCGCCGCCACCACCCCCATCCAAGCAATAA 2208 46.69 MESNINNNDNITQQNQKKKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMKAQQDRSDNVILRAENETLKNENYRLQSALRNIICPSCGGQGILGEPSLDEQQLRLENARLRDQLEQVCSMTTRYTGRPIQAMASTAPPLMQPSLDLDMNIYSRQYTEAMVPSSEMMALPSMLPPEAAHFPEGGLLIEEEKTLAMDLAVSSIAELVKMCRLTEPLWVRDNESGKEILNVEEHGRMFPWPLNLKQHLINEFRTEATRDSAVVIMNSITLVDAFLDANKWMELFPSIVAKAKTVQVISSSVSGHATSSLQLMYAELQTLSPLVPTREAHFLRCCQQNADEGSWTVVDFPIDSFHDSLQHSFPRYRRKPSGCIIQDMPNGYSRVTWVEHAEIEEKPIHQIFDHFVHSGMAFGAHRWLAILQRQCERIASLMARNISDLGVIPSPEARQNLMKLAQRMIRTFSVNISTSGGQSWTALSDSPEDTVRITTRKVVEPGQPNGVILSAVSTTWLPYPHYRVFDLLRDERRRSQLEVLSNGNSLHEVAHIANGSHPGNCISLLRINVASNSSQHVELMLQESCTDQSGSLVVYATIDVDSIQLAMSGEDPSCIPLLPIGFSIVPILGSTVDGHPAPPPDDGTPNANSGCLLTVGLQVLASTIPSAKLNLSSVTAINNHLCNTVHQINIALGGPGRLENDNNVVAEPNNPPTPPPPPPPSKQ 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1059325 1064980 + MELO3C003433.2.1 Cme04g00141 324402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00141 735 Gene3D - 3 86 - -
Cme04g00141 735 ProSiteProfiles START domain profile. 209 448 IPR002913 GO:0008289
Cme04g00141 735 Gene3D - 263 442 IPR023393 -
Cme04g00141 735 PANTHER - 12 710 - -
Cme04g00141 735 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 12 710 IPR042160 -
Cme04g00141 735 SMART START_1 218 445 IPR002913 GO:0008289
Cme04g00141 735 CDD homeodomain 18 76 IPR001356 GO:0003677
Cme04g00141 735 SUPERFAMILY Bet v1-like 211 447 - -
Cme04g00141 735 SUPERFAMILY Bet v1-like 482 700 - -
Cme04g00141 735 ProSiteProfiles 'Homeobox' domain profile. 15 75 IPR001356 GO:0003677
Cme04g00141 735 SUPERFAMILY Homeodomain-like 10 76 IPR009057 -
Cme04g00141 735 MobiDBLite consensus disorder prediction 1 24 - -
Cme04g00141 735 Pfam Homeodomain 18 73 IPR001356 GO:0003677
Cme04g00141 735 ProSitePatterns 'Homeobox' domain signature. 50 73 IPR017970 GO:0000981|GO:0006355
Cme04g00141 735 Coils Coil 74 94 - -
Cme04g00141 735 MobiDBLite consensus disorder prediction 711 735 - -
Cme04g00141 735 Pfam START domain 220 445 IPR002913 GO:0008289
Cme04g00141 735 CDD START_ArGLABRA2_like 213 444 - -
Cme04g00141 735 SMART HOX_1 16 79 IPR001356 GO:0003677
Cme04g00141 735 MobiDBLite consensus disorder prediction 720 735 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00141 Cme-Chr4:1059325 Cme12g02041 Cme-Chr12:25897226 0 dispersed
Cme04g00141 Cme-Chr4:1059325 Cme11g02549 Cme-Chr11:31886646 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41130 PF01852 START 2.10E-42 CL0209 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00141 - - csv:101212772 1407.51