Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00145 CTTCACACAAAAGAAAACATAACCATTCATCACTTCATACCTATTCTCTCATTTTTCTTCTCTCTCTCTCTCTTTCTCTCCCCCCTTTCTCTCTCCTTTTTTCTTCAAAATCCCAAATACAAGAGTGAAGAACAACAACAACCCACAAATCTACTCTCATTTCTCTTCAAAACCCATATTTTCATTTCTTCAACAAGTCTCTACATCTTGAGAAAAATACACAACAAAACCAGAGGGAATAAGAACACAAGAAGAAGAATTTTGGGTGTGTGGAGGGGTTTTTTCTTTTTCATTTTTCTTTTTTTTTTTTTGGAAAAAGATATGGAGTTGTTTCCTGCACAACCAGATTTGTCACTACAAATTAGCCCTCCAAATACTAATAAACCCTCTTCATCTTGGAGATCAAGGACGAGTAGCTCTTCCTCTTCACAAGAAGATGTTGATTTGGAGTTTTGGAATAATAAATCCACTCCTAAACATCATCTTCATCATCTTCATCCTCACTCTTGTTTTGATCTCTCTCTTTCAAATTTAACTCAAATTAACCATCATCAATACCCTAATGTTTCTCCTTCTCCAACTCCTAATCATCATCATCTTCTTCATCATCGTCATCATCGTTATCCCGTCCTCGAATCCCCCGCTCACCTTTTTGAAACCCTAAACAAAACCCACAACCGACCTACGGCCATCTTCCACCACAATACGCAGCCCCCGTCGTCATCGCTCGACCCGACACCGACCCCGTTTCCAGGGCAAATAAATGGTCAAGACTTGGGATTTTTGCGACCCATTAGAGGAATTCCGGTGTACCATCAGACGAATAATCCCTCCGTCGGTACCGGCAACGGCGGCGTTGTCACTCCCTCCGCCGCTAACCACGGCCAGATTATGATGCGGTCGAGATTCTTGTCTAGGTTTCCAGCCAAACGCAGCATGAGAGCACCACGGATGAGATGGACTTCTACTCTTCATGCTCGCTTTGTTCATGCTGTTGAACTTCTTGGTGGCCATGAAAGAGCGACGCCGAAGTCGGTTCTCGAGCTCATGGATGTCAAAGATCTAACCTTAGCTCATGTGAAATCTCATTTACAGATGTACCGTACAGTGAAGACTACAGACAGAGCAGCAGCTTCTTCAGGCCAATCAGATTTATATGAAAATGCTTCATCTGGGGACACAAGCAATATTGAAGATATAATATTTGACATTCAAAAACCAACCATTGGAAGACAAAATGAGAACTCAATTCAACAAACCTCAAGGCAAAACCCTCACCAAGACAAGGATTATCATGCCCTATGGAGCAATTCTTCAAGGGAAGCATGGTTGCATGGTTTGCCAAATGATTCTTCTAGGGACCTTTCTTCATCGCTCGAGAACGATATCGATCCAAAGAGCTCAAACAATGAGAGGCTATCAGAAATAAGCTCATCAACAGATATTATTTGTGGTGTGACAAATAATAATCCTCTGAAGCCTAATTTAGAATTCACGTTAGGAAGGCCAATTTGA 1515 41.65 LHTKENITIHHFIPILSFFFSLSLFLSPLSLSFFLQNPKYKSEEQQQPTNLLSFLFKTHIFISSTSLYILRKIHNKTRGNKNTRRRILGVWRGFFFFIFLFFFLEKDMELFPAQPDLSLQISPPNTNKPSSSWRSRTSSSSSSQEDVDLEFWNNKSTPKHHLHHLHPHSCFDLSLSNLTQINHHQYPNVSPSPTPNHHHLLHHRHHRYPVLESPAHLFETLNKTHNRPTAIFHHNTQPPSSSLDPTPTPFPGQINGQDLGFLRPIRGIPVYHQTNNPSVGTGNGGVVTPSAANHGQIMMRSRFLSRFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSGQSDLYENASSGDTSNIEDIIFDIQKPTIGRQNENSIQQTSRQNPHQDKDYHALWSNSSREAWLHGLPNDSSRDLSSSLENDIDPKSSNNERLSEISSSTDIICGVTNNNPLKPNLEFTLGRPI 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1097100 1102049 + MELO3C003436.2.1 Cme04g00145 324406

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00145 504 MobiDBLite consensus disorder prediction 408 424 - -
Cme04g00145 504 MobiDBLite consensus disorder prediction 121 141 - -
Cme04g00145 504 MobiDBLite consensus disorder prediction 451 474 - -
Cme04g00145 504 MobiDBLite consensus disorder prediction 408 429 - -
Cme04g00145 504 SUPERFAMILY Homeodomain-like 313 369 IPR009057 -
Cme04g00145 504 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 108 502 - -
Cme04g00145 504 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 108 502 IPR044847 GO:0000976|GO:0006355|GO:0010158
Cme04g00145 504 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 316 369 IPR006447 GO:0003677
Cme04g00145 504 Gene3D - 315 372 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00145 - - - csv:101219785 738.799
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00145 Cme-Chr4:1097100 Cme11g01142 Cme-Chr11:17273067 1.22E-18 dispersed
Cme03g01993 Cme-Chr3:27705381 Cme04g00145 Cme-Chr4:1097100 6.48E-37 transposed
Cme04g00674 Cme-Chr4:7270936 Cme04g00145 Cme-Chr4:1097100 2.40E-33 transposed
Cme06g01406 Cme-Chr6:12420063 Cme04g00145 Cme-Chr4:1097100 1.85E-51 transposed
Cme06g02446 Cme-Chr6:31502837 Cme04g00145 Cme-Chr4:1097100 3.69E-08 transposed
Cme08g00220 Cme-Chr8:1479912 Cme04g00145 Cme-Chr4:1097100 5.44E-20 transposed
Cme08g02186 Cme-Chr8:27881112 Cme04g00145 Cme-Chr4:1097100 6.99E-23 transposed
Cme10g01311 Cme-Chr10:14381765 Cme04g00145 Cme-Chr4:1097100 3.28E-21 transposed
Cme12g01809 Cme-Chr12:24557665 Cme04g00145 Cme-Chr4:1097100 2.30E-36 transposed
Cme04g00145 Cme-Chr4:1097100 Cme06g02445 Cme-Chr6:31500133 1.01E-20 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g717 . . . . . . . . Cmo06g00638 . Cma02g01632 . Car02g01391 . . . . . . . . . . . Cla10g00132 Cam10g0130 Cec10g0139 Cco10g0139 Clacu10g0135 Cmu10g0982 Cre10g0392 . . . . . . Chy04g00122 . . Blo19g00245 . . . . . . . Cmo02g01676 Cmo19g00231 Cma06g00631 . Car06g00565 . . Cpe15g00191 . . . . . . . . . . . . . . . . . Cme04g00145
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme11g01645 CCT 22 220 G2-like Transcription Factor Family AT3G24120 54.4 1.1e-43 174.1
Cme01g01493 CCT 16 176 G2-like Transcription Factor Family AT3G24120 59.8 5.9e-42 168.3
Cme04g01468 . 4 152 G2-like Transcription Factor Family AT3G24120 53.7 1.0e-38 157.5
Cme08g01009 . 31 186 G2-like Transcription Factor Family AT3G24120 56.4 3.0e-38 156.0
Cme06g01406 . 298 500 G2-like Transcription Factor Family AT5G16560 54.5 1.6e-45 180.6
Cme04g00145 . 298 503 G2-like Transcription Factor Family AT5G16560 50.9 6.4e-39 158.7
Cme04g00674 CCT 1 159 G2-like Transcription Factor Family AT5G42630 59.0 4.3e-37 151.8
Cme02g01289 CCT 4 340 G2-like Transcription Factor Family AT2G03500 51.4 6.1e-80 295.0
Cme03g00787 . 20 258 G2-like Transcription Factor Family AT1G25550 55.2 1.3e-51 200.3
Cme10g00288 . 19 255 G2-like Transcription Factor Family AT1G25550 53.4 2.6e-47 186.0
Cme08g01427 . 1 301 G2-like Transcription Factor Family AT5G05090 55.7 2.5e-76 282.3
Cme04g02132 . 1 286 G2-like Transcription Factor Family AT5G05090 55.9 4.9e-72 268.1
Cme11g01645 CCT 22 220 G2-like Transcription Factor Family AT3G24120 54.4 1.1e-43 174.1
Cme01g01493 CCT 16 176 G2-like Transcription Factor Family AT3G24120 59.8 5.9e-42 168.3
Cme04g01468 . 4 152 G2-like Transcription Factor Family AT3G24120 53.7 1.0e-38 157.5
Cme08g01009 . 31 186 G2-like Transcription Factor Family AT3G24120 56.4 3.0e-38 156.0
Cme01g01493 CCT 1 379 G2-like Transcription Factor Family AT1G79430 53.1 4.0e-85 312.0
Cme11g01645 CCT 1 223 G2-like Transcription Factor Family AT1G79430 72.3 4.9e-75 278.5
Cme04g01787 . 72 273 G2-like Transcription Factor Family AT5G18240 52.7 1.2e-40 164.1
Cme08g01008 . 54 270 G2-like Transcription Factor Family AT2G01060 65.2 1.2e-53 206.8
Cme08g01427 . 1 301 G2-like Transcription Factor Family AT3G10760 63.5 6.4e-93 337.8
Cme04g02132 . 1 286 G2-like Transcription Factor Family AT3G10760 59.2 4.6e-83 305.1
Cme08g01427 . 1 203 G2-like Transcription Factor Family AT2G40970 62.1 2.3e-63 239.2
Cme04g02132 . 1 199 G2-like Transcription Factor Family AT2G40970 63.3 1.1e-57 220.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001608 1 1 2 1 2 2 4 2 2 2 2 2 4 3 2 5 2 2 4 2 2 2 2 2 2 2 2 6 2 2 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41132 None None None None Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00145 Cme_Chr04 FPKM 0.102381 0.0 0.0 0.0 0.606687 0.0 0.652259 0.0 0.0 0.151807