Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme04g00145 | CTTCACACAAAAGAAAACATAACCATTCATCACTTCATACCTATTCTCTCATTTTTCTTCTCTCTCTCTCTCTTTCTCTCCCCCCTTTCTCTCTCCTTTTTTCTTCAAAATCCCAAATACAAGAGTGAAGAACAACAACAACCCACAAATCTACTCTCATTTCTCTTCAAAACCCATATTTTCATTTCTTCAACAAGTCTCTACATCTTGAGAAAAATACACAACAAAACCAGAGGGAATAAGAACACAAGAAGAAGAATTTTGGGTGTGTGGAGGGGTTTTTTCTTTTTCATTTTTCTTTTTTTTTTTTTGGAAAAAGATATGGAGTTGTTTCCTGCACAACCAGATTTGTCACTACAAATTAGCCCTCCAAATACTAATAAACCCTCTTCATCTTGGAGATCAAGGACGAGTAGCTCTTCCTCTTCACAAGAAGATGTTGATTTGGAGTTTTGGAATAATAAATCCACTCCTAAACATCATCTTCATCATCTTCATCCTCACTCTTGTTTTGATCTCTCTCTTTCAAATTTAACTCAAATTAACCATCATCAATACCCTAATGTTTCTCCTTCTCCAACTCCTAATCATCATCATCTTCTTCATCATCGTCATCATCGTTATCCCGTCCTCGAATCCCCCGCTCACCTTTTTGAAACCCTAAACAAAACCCACAACCGACCTACGGCCATCTTCCACCACAATACGCAGCCCCCGTCGTCATCGCTCGACCCGACACCGACCCCGTTTCCAGGGCAAATAAATGGTCAAGACTTGGGATTTTTGCGACCCATTAGAGGAATTCCGGTGTACCATCAGACGAATAATCCCTCCGTCGGTACCGGCAACGGCGGCGTTGTCACTCCCTCCGCCGCTAACCACGGCCAGATTATGATGCGGTCGAGATTCTTGTCTAGGTTTCCAGCCAAACGCAGCATGAGAGCACCACGGATGAGATGGACTTCTACTCTTCATGCTCGCTTTGTTCATGCTGTTGAACTTCTTGGTGGCCATGAAAGAGCGACGCCGAAGTCGGTTCTCGAGCTCATGGATGTCAAAGATCTAACCTTAGCTCATGTGAAATCTCATTTACAGATGTACCGTACAGTGAAGACTACAGACAGAGCAGCAGCTTCTTCAGGCCAATCAGATTTATATGAAAATGCTTCATCTGGGGACACAAGCAATATTGAAGATATAATATTTGACATTCAAAAACCAACCATTGGAAGACAAAATGAGAACTCAATTCAACAAACCTCAAGGCAAAACCCTCACCAAGACAAGGATTATCATGCCCTATGGAGCAATTCTTCAAGGGAAGCATGGTTGCATGGTTTGCCAAATGATTCTTCTAGGGACCTTTCTTCATCGCTCGAGAACGATATCGATCCAAAGAGCTCAAACAATGAGAGGCTATCAGAAATAAGCTCATCAACAGATATTATTTGTGGTGTGACAAATAATAATCCTCTGAAGCCTAATTTAGAATTCACGTTAGGAAGGCCAATTTGA | 1515 | 41.65 | LHTKENITIHHFIPILSFFFSLSLFLSPLSLSFFLQNPKYKSEEQQQPTNLLSFLFKTHIFISSTSLYILRKIHNKTRGNKNTRRRILGVWRGFFFFIFLFFFLEKDMELFPAQPDLSLQISPPNTNKPSSSWRSRTSSSSSSQEDVDLEFWNNKSTPKHHLHHLHPHSCFDLSLSNLTQINHHQYPNVSPSPTPNHHHLLHHRHHRYPVLESPAHLFETLNKTHNRPTAIFHHNTQPPSSSLDPTPTPFPGQINGQDLGFLRPIRGIPVYHQTNNPSVGTGNGGVVTPSAANHGQIMMRSRFLSRFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSGQSDLYENASSGDTSNIEDIIFDIQKPTIGRQNENSIQQTSRQNPHQDKDYHALWSNSSREAWLHGLPNDSSRDLSSSLENDIDPKSSNNERLSEISSSTDIICGVTNNNPLKPNLEFTLGRPI | 504 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 1097100 | 1102049 | + | MELO3C003436.2.1 | Cme04g00145 | 324406 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme04g00145 | 504 | MobiDBLite | consensus disorder prediction | 408 | 424 | - | - | |
| Cme04g00145 | 504 | MobiDBLite | consensus disorder prediction | 121 | 141 | - | - | |
| Cme04g00145 | 504 | MobiDBLite | consensus disorder prediction | 451 | 474 | - | - | |
| Cme04g00145 | 504 | MobiDBLite | consensus disorder prediction | 408 | 429 | - | - | |
| Cme04g00145 | 504 | SUPERFAMILY | Homeodomain-like | 313 | 369 | IPR009057 | - | |
| Cme04g00145 | 504 | PANTHER | TRANSCRIPTION FACTOR KAN2-RELATED | 108 | 502 | - | - | |
| Cme04g00145 | 504 | PANTHER | TRANSCRIPTION FACTOR KAN2-RELATED | 108 | 502 | IPR044847 | GO:0000976|GO:0006355|GO:0010158 | |
| Cme04g00145 | 504 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 316 | 369 | IPR006447 | GO:0003677 | |
| Cme04g00145 | 504 | Gene3D | - | 315 | 372 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme04g00145 | Cme-Chr4:1097100 | Cme11g01142 | Cme-Chr11:17273067 | 1.22E-18 | dispersed | |
| Cme03g01993 | Cme-Chr3:27705381 | Cme04g00145 | Cme-Chr4:1097100 | 6.48E-37 | transposed | |
| Cme04g00674 | Cme-Chr4:7270936 | Cme04g00145 | Cme-Chr4:1097100 | 2.40E-33 | transposed | |
| Cme06g01406 | Cme-Chr6:12420063 | Cme04g00145 | Cme-Chr4:1097100 | 1.85E-51 | transposed | |
| Cme06g02446 | Cme-Chr6:31502837 | Cme04g00145 | Cme-Chr4:1097100 | 3.69E-08 | transposed | |
| Cme08g00220 | Cme-Chr8:1479912 | Cme04g00145 | Cme-Chr4:1097100 | 5.44E-20 | transposed | |
| Cme08g02186 | Cme-Chr8:27881112 | Cme04g00145 | Cme-Chr4:1097100 | 6.99E-23 | transposed | |
| Cme10g01311 | Cme-Chr10:14381765 | Cme04g00145 | Cme-Chr4:1097100 | 3.28E-21 | transposed | |
| Cme12g01809 | Cme-Chr12:24557665 | Cme04g00145 | Cme-Chr4:1097100 | 2.30E-36 | transposed | |
| Cme04g00145 | Cme-Chr4:1097100 | Cme06g02445 | Cme-Chr6:31500133 | 1.01E-20 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 41132 | None | None | None | None | Cme | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme04g00145 | - | - | csv:101219785 | 738.799 |