Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme04g00153 | ATGGGTGGCAGTGAGATGAATAAATCCGCAAAGGAAGAATCCAAAACAGCACCTGCCACTACGCAGGAGCAGTCTCCAAACACAAGCACTGGCACTGTGAATCCTGAATGGTCAGGATTTCAGGCATATTCTGCAATACCTCCACCTGGATACTTGGCAACGAGCCCCCAAGCACACCCATATATGTGGGGGGTACAGCCAATTATGCCTCCTTACGGAACCCCTCCACATCCATATGTTGCAATGTACCCTCATGGTGGCATATATGCTCATCCACCTATGCCTCCTGGATCGTATCCTTACAGTCCTTTTGCTATAGCTTCTCCAAATGGCATTGCTGAGGCTTCTGGGAATACACCAGGCAACATGGAAGGGGAAGGTAAACCATCTGAGCTGAAAGAAAAATTGCCAATTAAAAGATCGAAAGGAAGTCTGGGAAGTTTAAGCATGATAACTGGGAAGAACAATGAGCTTGGTAAACCATCAGGGACATCTGCTAATGGAGTTTATTCTAAAAGTGCTGAAAGTGAAAGTGAAGGCACGAGTGAAGGAAGTGGTGCTGACTCTGAAAACGATTCACAACTAAAATCTGGTTCTGGGAAAGATTCTTTAGAAGGTGGAGGGACTCCTAATGGTTTAATGCATGGTTCTCAGAATGAAGGACATAGTCTTGCACATCCATTGGTGAACCAAACGATGTCCATAATACCAATCCAAGCTTCAGGAGCTGTTTCGGGTCCTGCTACAAATTTAAATATAGGAATGGATTATTGGGGTACCCCAACAACTTCTGCCATCTCTTCATTGTGTGGGAAGGTCCCTTCAGCTCCAATTGCAGGAGCTGTTGCTGCTGGGTCACGAGACGGCATTCCGTCACAGCCTTGGTTACAGGATGAAAGAGAGCTAAAAAGACAAAGAAGGAAGCAATCAAATAGAGAATCTGCTCGTAGATCTCGGTTGCGTAAACAGGCTGAATGTGATGAGCTATCTCAACGTGCCGAAGCTTTGAAGGAAGAAAATGCGAGTCTAAGATCTGAAGTGGATAGGATCAGGACTGAGTACGAGCAACTTCTTTCAGAAAATGCCTCTCTCAAGAGGAGGCTTGGCGAAAGTGATGGAAATGAAGATCCAAGATCTACCAAAGACGGCCAAAATTTGAAAAAAGGTCATCATACATCCCGGACCCAACTTGCTAAGGGATAA | 1203 | 45.3 | MGGSEMNKSAKEESKTAPATTQEQSPNTSTGTVNPEWSGFQAYSAIPPPGYLATSPQAHPYMWGVQPIMPPYGTPPHPYVAMYPHGGIYAHPPMPPGSYPYSPFAIASPNGIAEASGNTPGNMEGEGKPSELKEKLPIKRSKGSLGSLSMITGKNNELGKPSGTSANGVYSKSAESESEGTSEGSGADSENDSQLKSGSGKDSLEGGGTPNGLMHGSQNEGHSLAHPLVNQTMSIIPIQASGAVSGPATNLNIGMDYWGTPTTSAISSLCGKVPSAPIAGAVAAGSRDGIPSQPWLQDERELKRQRRKQSNRESARRSRLRKQAECDELSQRAEALKEENASLRSEVDRIRTEYEQLLSENASLKRRLGESDGNEDPRSTKDGQNLKKGHHTSRTQLAKG | 400 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 1163943 | 1174347 | - | MELO3C003443.2.1 | Cme04g00153 | 324414 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme04g00153 | 400 | MobiDBLite | consensus disorder prediction | 113 | 223 | - | - | |
Cme04g00153 | 400 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - | |
Cme04g00153 | 400 | PANTHER | G-BOX-BINDING FACTOR 3-RELATED | 1 | 392 | IPR044827 | GO:0003700|GO:0006355|GO:0043565 | |
Cme04g00153 | 400 | PANTHER | BZIP TRANSCRIPTION FACTOR 68 | 1 | 392 | - | - | |
Cme04g00153 | 400 | Gene3D | - | 302 | 358 | - | - | |
Cme04g00153 | 400 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 301 | 364 | IPR004827 | GO:0003700|GO:0006355 | |
Cme04g00153 | 400 | Coils | Coil | 312 | 367 | - | - | |
Cme04g00153 | 400 | CDD | bZIP_plant_GBF1 | 304 | 354 | IPR045314 | GO:0003700|GO:0006355 | |
Cme04g00153 | 400 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 306 | 321 | IPR004827 | GO:0003700|GO:0006355 | |
Cme04g00153 | 400 | Pfam | G-box binding protein MFMR | 1 | 95 | IPR012900 | - | |
Cme04g00153 | 400 | SUPERFAMILY | Leucine zipper domain | 302 | 358 | IPR046347 | GO:0003700|GO:0006355 | |
Cme04g00153 | 400 | Pfam | bZIP transcription factor | 299 | 361 | IPR004827 | GO:0003700|GO:0006355 | |
Cme04g00153 | 400 | MobiDBLite | consensus disorder prediction | 365 | 389 | - | - | |
Cme04g00153 | 400 | MobiDBLite | consensus disorder prediction | 145 | 200 | - | - | |
Cme04g00153 | 400 | MobiDBLite | consensus disorder prediction | 284 | 327 | - | - | |
Cme04g00153 | 400 | MobiDBLite | consensus disorder prediction | 13 | 39 | - | - | |
Cme04g00153 | 400 | SMART | brlzneu | 299 | 363 | IPR004827 | GO:0003700|GO:0006355 | |
Cme04g00153 | 400 | Pfam | Disordered region downstream of MFMR | 134 | 266 | - | - | |
Cme04g00153 | 400 | MobiDBLite | consensus disorder prediction | 358 | 400 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cme04g00153 | Cme06g02439 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme04g00153 | Cme-Chr4:1163943 | Cme08g00828 | Cme-Chr8:5489091 | 3.47E-28 | dispersed | |
Cme04g02415 | Cme-Chr4:30783226 | Cme04g00153 | Cme-Chr4:1163943 | 5.91E-09 | transposed | |
Cme06g00124 | Cme-Chr6:786305 | Cme04g00153 | Cme-Chr4:1163943 | 8.71E-49 | transposed | |
Cme04g00153 | Cme-Chr4:1163943 | Cme06g02439 | Cme-Chr6:31429038 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
41134 | PF16596 | MFMR_assoc | 3.80E-45 | No_clan | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme04g00153 | K09060 | - | csv:101214217 | 775.393 |