Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00153 ATGGGTGGCAGTGAGATGAATAAATCCGCAAAGGAAGAATCCAAAACAGCACCTGCCACTACGCAGGAGCAGTCTCCAAACACAAGCACTGGCACTGTGAATCCTGAATGGTCAGGATTTCAGGCATATTCTGCAATACCTCCACCTGGATACTTGGCAACGAGCCCCCAAGCACACCCATATATGTGGGGGGTACAGCCAATTATGCCTCCTTACGGAACCCCTCCACATCCATATGTTGCAATGTACCCTCATGGTGGCATATATGCTCATCCACCTATGCCTCCTGGATCGTATCCTTACAGTCCTTTTGCTATAGCTTCTCCAAATGGCATTGCTGAGGCTTCTGGGAATACACCAGGCAACATGGAAGGGGAAGGTAAACCATCTGAGCTGAAAGAAAAATTGCCAATTAAAAGATCGAAAGGAAGTCTGGGAAGTTTAAGCATGATAACTGGGAAGAACAATGAGCTTGGTAAACCATCAGGGACATCTGCTAATGGAGTTTATTCTAAAAGTGCTGAAAGTGAAAGTGAAGGCACGAGTGAAGGAAGTGGTGCTGACTCTGAAAACGATTCACAACTAAAATCTGGTTCTGGGAAAGATTCTTTAGAAGGTGGAGGGACTCCTAATGGTTTAATGCATGGTTCTCAGAATGAAGGACATAGTCTTGCACATCCATTGGTGAACCAAACGATGTCCATAATACCAATCCAAGCTTCAGGAGCTGTTTCGGGTCCTGCTACAAATTTAAATATAGGAATGGATTATTGGGGTACCCCAACAACTTCTGCCATCTCTTCATTGTGTGGGAAGGTCCCTTCAGCTCCAATTGCAGGAGCTGTTGCTGCTGGGTCACGAGACGGCATTCCGTCACAGCCTTGGTTACAGGATGAAAGAGAGCTAAAAAGACAAAGAAGGAAGCAATCAAATAGAGAATCTGCTCGTAGATCTCGGTTGCGTAAACAGGCTGAATGTGATGAGCTATCTCAACGTGCCGAAGCTTTGAAGGAAGAAAATGCGAGTCTAAGATCTGAAGTGGATAGGATCAGGACTGAGTACGAGCAACTTCTTTCAGAAAATGCCTCTCTCAAGAGGAGGCTTGGCGAAAGTGATGGAAATGAAGATCCAAGATCTACCAAAGACGGCCAAAATTTGAAAAAAGGTCATCATACATCCCGGACCCAACTTGCTAAGGGATAA 1203 45.3 MGGSEMNKSAKEESKTAPATTQEQSPNTSTGTVNPEWSGFQAYSAIPPPGYLATSPQAHPYMWGVQPIMPPYGTPPHPYVAMYPHGGIYAHPPMPPGSYPYSPFAIASPNGIAEASGNTPGNMEGEGKPSELKEKLPIKRSKGSLGSLSMITGKNNELGKPSGTSANGVYSKSAESESEGTSEGSGADSENDSQLKSGSGKDSLEGGGTPNGLMHGSQNEGHSLAHPLVNQTMSIIPIQASGAVSGPATNLNIGMDYWGTPTTSAISSLCGKVPSAPIAGAVAAGSRDGIPSQPWLQDERELKRQRRKQSNRESARRSRLRKQAECDELSQRAEALKEENASLRSEVDRIRTEYEQLLSENASLKRRLGESDGNEDPRSTKDGQNLKKGHHTSRTQLAKG 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1163943 1174347 - MELO3C003443.2.1 Cme04g00153 324414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00153 400 MobiDBLite consensus disorder prediction 113 223 - -
Cme04g00153 400 MobiDBLite consensus disorder prediction 1 40 - -
Cme04g00153 400 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 392 IPR044827 GO:0003700|GO:0006355|GO:0043565
Cme04g00153 400 PANTHER BZIP TRANSCRIPTION FACTOR 68 1 392 - -
Cme04g00153 400 Gene3D - 302 358 - -
Cme04g00153 400 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 301 364 IPR004827 GO:0003700|GO:0006355
Cme04g00153 400 Coils Coil 312 367 - -
Cme04g00153 400 CDD bZIP_plant_GBF1 304 354 IPR045314 GO:0003700|GO:0006355
Cme04g00153 400 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 306 321 IPR004827 GO:0003700|GO:0006355
Cme04g00153 400 Pfam G-box binding protein MFMR 1 95 IPR012900 -
Cme04g00153 400 SUPERFAMILY Leucine zipper domain 302 358 IPR046347 GO:0003700|GO:0006355
Cme04g00153 400 Pfam bZIP transcription factor 299 361 IPR004827 GO:0003700|GO:0006355
Cme04g00153 400 MobiDBLite consensus disorder prediction 365 389 - -
Cme04g00153 400 MobiDBLite consensus disorder prediction 145 200 - -
Cme04g00153 400 MobiDBLite consensus disorder prediction 284 327 - -
Cme04g00153 400 MobiDBLite consensus disorder prediction 13 39 - -
Cme04g00153 400 SMART brlzneu 299 363 IPR004827 GO:0003700|GO:0006355
Cme04g00153 400 Pfam Disordered region downstream of MFMR 134 266 - -
Cme04g00153 400 MobiDBLite consensus disorder prediction 358 400 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme04g00153 Cme06g02439 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00153 Cme-Chr4:1163943 Cme08g00828 Cme-Chr8:5489091 3.47E-28 dispersed
Cme04g02415 Cme-Chr4:30783226 Cme04g00153 Cme-Chr4:1163943 5.91E-09 transposed
Cme06g00124 Cme-Chr6:786305 Cme04g00153 Cme-Chr4:1163943 8.71E-49 transposed
Cme04g00153 Cme-Chr4:1163943 Cme06g02439 Cme-Chr6:31429038 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41134 PF16596 MFMR_assoc 3.80E-45 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00153 K09060 - csv:101214217 775.393