Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00166 ATGGCTTCTCTCCAGTCTATTCTCCGGCCCATTCCTCAGGCAACAAACAGCCCGGCAGTGTTACCTCACCGTTCTCAAAGCTCAATACGTTTTACTCGATTTCGCTCTCACCATGTACAGATTTTGCGCAATACCCGACGGCTGTATTTCCGAGGATTCAGAATTATGGCTTCGATTGCAGATACTGTTGATCACACTTCTGATGCTCCGGTGCTTACTAGTTCAGAGGTTATCGAAAGGCTAAGGGCAAGAAGAGAAAATCAAGAAAACCAGCAAGAATACCTTGCCATGTATTCCAGCGTTTTTGGAGGAATTACGACAGACCCAGCTGCTATGGTAATTCCAATTGATGATCACATGGTCCACCGGGGACACGGTGTTTTTGATACTGCTGCCATAGTAGATGGATATCTGTATGAGTTGGACCAGCACCTTGACCGCATTTTGAAGTCAGCATCGATGGCAAAAATTAACCTCCCAATTCCATATGATCGGGAGATGATAAGAAGGATACTCATAAGAACTGTGAGTGCTTCTAAGTGTAGAAATGGATCACTTCGATACTGGCTCTCTGCAGGACCTGGAGATTTTCAACTTTCTTCTTCTGGCTGTCATCTGTCAGCCCTTTATGCAGTTGTAATTCAAGGGAAGCCGCCATCTCGTCCAAAAGGCATCAAAGTTATAACTTCATCAGTCCCGATGAAACCACCCCAATTTGCAATTATGAAGAGTGTAAATTACCTACCAAATGTTCTTTCAAAGATGGAAGCAGAAGAAAAAGGTGCATATGCATCCATTTGGTTGGACAGTGATGGATTCATTGCTGAAGGGCCTAATATGAACGTGGCTTTTATTACAAGCGATAAGGAATTTATAATGCCTCACTTCGACAAAATTCTAAGCGGGTGCACGGCTAAGAGAATTATAAATCTTGCTGAGAGGCTGGTGAAAGAGGGTAAGCTTCGGAGTATAAGCTGTGAAAATATAACCATGGAGGAAGGGAAGAAGGCGGATGAAATGATGCTTATTGGAAGTGGAGTCCTTGTTTCTCCTGTACTGCAGTGGGATGAGCAGATAATTGGTGATGGTAAGTATCCCTATAATCGGCCTGATGAATTTTTATCTCATAAACTAACCTTGTGA 1143 43.22 MASLQSILRPIPQATNSPAVLPHRSQSSIRFTRFRSHHVQILRNTRRLYFRGFRIMASIADTVDHTSDAPVLTSSEVIERLRARRENQENQQEYLAMYSSVFGGITTDPAAMVIPIDDHMVHRGHGVFDTAAIVDGYLYELDQHLDRILKSASMAKINLPIPYDREMIRRILIRTVSASKCRNGSLRYWLSAGPGDFQLSSSGCHLSALYAVVIQGKPPSRPKGIKVITSSVPMKPPQFAIMKSVNYLPNVLSKMEAEEKGAYASIWLDSDGFIAEGPNMNVAFITSDKEFIMPHFDKILSGCTAKRIINLAERLVKEGKLRSISCENITMEEGKKADEMMLIGSGVLVSPVLQWDEQIIGDGKYPYNRPDEFLSHKLTL 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1258468 1261476 + MELO3C003454.2.1 Cme04g00166 324427

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00166 380 Coils Coil 71 91 - -
Cme04g00166 380 PANTHER AMINO-ACID AMINOTRANSFERASE 64 364 - -
Cme04g00166 380 PANTHER BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE-LIKE 64 364 - -
Cme04g00166 380 Gene3D - 219 369 IPR043132 -
Cme04g00166 380 Pfam Amino-transferase class IV 126 354 IPR001544 GO:0003824
Cme04g00166 380 Gene3D - 72 215 IPR043131 -
Cme04g00166 380 CDD PLPDE_IV 118 364 - -
Cme04g00166 380 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 101 365 IPR036038 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00166 K18482 ADCL; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38] - csv:101216383 681.789
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00166 Cme-Chr4:1258468 Cme07g00568 Cme-Chr7:4862240 4.81E-120 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g321 Blo01g01769 . . . . Bpe02g00175 . Bma01g02551 . . Cma01g01430 . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0608 . Csa03g04561 . . . . . . . . . . Sed12g1405 Cmo01g01479 . . . . . . Cpe02g00518 Bhi09g02599 Tan01g3948 Cmetu04g1371 . Hepe01g2230 Mch11g0780 . . . . . . . . . . . Cme04g00166
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012240 1 2 1 1 1 0 1 0 0 0 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 2 4 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00166 Cme_Chr04 FPKM 82.909523 84.068314 49.973358 54.590359 23.207336 17.263435 25.186872 26.748428 34.741684 33.965942