Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00171 ATGGACGAAGAACATCATCAGAAGAATGATTCTAGTATCATATTGAGGACTACAGTCCCATTCATTGAGATTGATTCTTTATTCATAGATCTTTCCAGTTGTATTGATAAACCTGATGCTGGAAACTGTGACCATTTCTCCATTCGTGGATATGCATCCCAAATGCGTGAAAAAGATTGGAAAAAATGCTGGCCATTTGATTTTGATGGTGACTATGAGTCTGCAGAGACAATATCCTTGCTTCCACCTTTTCATGTTCCGCAGTTCAGGTGGTGGCGCTGTCAAAATTGCAGGAAGGAAACTCCTGCAGGTGTTGAGAAATTTTCAAATCTAGATATGCCTGATGCTATAGAGGCAGTCGCTAATGCCTCTACGAATGTTTGCAACCTCAATCATCCTCCATCTTTCACGAGAGATGAGGTGGACTCTAGATGGATCTTGAATACAGAATTTCCCATAGCGACTAGTGTCATGCCGGAAGTTGAGTCAAATCTTATGTTAGAACAAAACAGAAGTGATCCAGTGTATAGGGAATCCGTTAAAAACTCCAAGCTACTCTGTGGAAATGAAGTTGCTGAGGTTGAGCTTGGTCTTCGGAACCTCAAAGTGATTGATGAAAATCTTGAAGGCTTTGATGATGAGGAACAAAAAATTGCACATAATGAACAAACTGAGGTAACTCGTTCATCATCAGGATTCAAGGTGATTGATCAGGCTTGTAAAAGCGAGAGACAGAGGTTTCCTGCAGACATTGATGGGAGTTATGCAACAGCATCTGAGCATACTGAAATTTCAGTAGAAAATGATACGCAAGGCCATCACATAGATAAGTCAGGCAGTTTGCACCGTCGAAAGGCTCGTAAGGTGCGCCTACTGACTGAGTTGCTGAATGAGAATGAAAACGTAAAAACGAATCACATTGATACGGAAGAGTCCCCATCCCATGGGACTTCTGAAAAATCTGAAGGGTTAAAAGACCTTTCTGCTTCCCGATGTACAGTGGCTGCCAAAAAGAATGTCAGGTGTTCAGGTCAGACTTCAAAAAGTAAAATGCCTCTGGATGAAGATTGCCTTGCAGCAGAGACTTCCTCTTCATACAACCCAATTTCTAATCCGTCTAAAAGGAAAAGCAAGATGCCTGTAATTGATGACCGGCGGGGGTTTTCCTGGAGCAATAGCATGCCAAGAAGAGATTCAGCCTCAAAAGAAGTGGAACTCAGGAACAATGATCCTCTAGTTGTTTCTTGTTCATCAGTGCCGGATGAATGTAGCGAAGGTTTGCATCTTTCCCTCTCTAGCAATTTAGCCACAGCAAGAAATGACAAAAAGTCTATTTTCGAGACCGAGGATGGCTCACATTCATTGTCGTCTTGGCAAGGAAGAGCAAGTGTTGTTAGGATCAAAGATAGTAAAGCGAAGAAACTTAAAGACTCAAATGTTCCTTTTAATTATTCAGATACCTTTTCTCGGCAAGTAGGGCACGGTGGAGTCAATAGTAAGATAACCTCTGGCAGAATGCATTTACAAAATGGGAAGCAAAATTCAAATTCTCAAGCTAATGATGATAGCTGGTCTCAGTTGCAGGCAATGGACAATTCCGGGGTAAACAAAGTTGAAAAGAGTGTTCAGGAGCACTTGGCAGCTCAGATGAAACAGAGTGAGCATACGGTTGGTAAGATATCTGAGCAAAGAGCTTTAGATGACATTCCAATGGAAATTGTTGAGCTCATGGCTAAAAATCAGTATGAAAGGTGCCTTGATAATACTAGAAATAGTAAATCCCTATCAAAGACAAGCTCAAAGAAGGCTAGAATTATGAATTTCAGTTATGTATGTGGCAGTAGTGACTCATTGCAGGAGAAAAATATTCCCAAGTGGAAACCCCAGGTTAGGAATGGGAGAAATAACTTGCATACGGTAGGAGATAATGTGGCATACGGAAAACAAGGTTCAGGTAATTACTTTTCTCACACTGAGGGGGGACATTTTAACATAGACCACCTTCGTCAGACTATTATCCCTCCAGAATATTCTACTTTTGGACATTCTCAAAATAAATCATCAAATCCTGTCAAGTTTTTGGCAAGAAGTACTAGTGAGAAGGCATGCTCTCAATATAGCCAATATCCTGGGGGTGTGGAAGATCAGGAGTCTTCTCATTACAGGGCCCAATCTTTCAGGGTAAATAACGCACACCATCCTGTTTCACAAAACAATGAAGGCGTAGCTCATCTGTGGAATGAAGTCCCGCCAAATCATCATTCATATATACCTACCACTCCTAGAAAGGTTGCATCTCAGTCGACTAGTGTTACTGCTAATAAAAACTATCCTGAATCAAGTAGCAGAGGGGGTATGAATCGGGGGCATAACTTTAAATTTTTCAATCCAAAAGTTACCAATCTTGAAAAAGATGATGGTAATTATGGCTTGGAAAATTTCAGCAGGACTAGTGCAAAGTACCCATTTTATTGCCATTCTAATGGCATTGAGCTTCCCCAAAACCCGAGGGGGTCATTGGATTTGTATTCTAACGAAACAATGTCAGCAATGCATTTACTCAGCCTTATGGATGCCGGAATGCAGCGCGGTGAAATGCATGAAAATCCAAAATTTAACAAGAAAAATTTTCCCCACGATCACAAAGCTAAGGATAGTTCTGGGCTGGATGTTGGGTTGCACAAGGCATATGATACCATCAATTATTCATCTGATTATTATGGTGAAATCCACCCGTTAAAGAAGTCTCACGATTGTTACCATCGCCCTTCAGTGGGCGGTGCATCAATTTCTCCTCCCATGGGAAATGAAAGTCATGAAATAGTTTCTGATTTAACAGGTAAAGTTGCATTGCAATGTAAACAAAAGGATAAAACCAAGTGCTCCACTTCAACATGGAACAGAGCTCAAAAATCACAGAAGAGTGTACTTACAAGTGGTCAAGGTTCCAGTGAAGGAGTTTTTCCCATTCATAGCTTGCAAAAGAAGTCTGGCGGTCCATCTAGCTCTTTGGTGTCCATGAGTGGATATCCTAGACTGGAAAATCCTGGACAATGTATAATAGAGCGACACGGTACAAAAAGAATGTTGGAGCATTCGAAAGTCAGTTCTGAGTTCGGAATCTGCAGGATTAATAAAAATCCTGCTGAGTTTAGCATACCAGAGGCAGGAAATGTATACATGATAGGCGCTGAAGATCTACAGTTTTCAAAAAGGATATCCGAAAATACATCGGATTTGAATAACATGGATGGACGCAAACGCAAAAGGAATACAAAGCATGCTGTTGTAAAACAACACGCATTACATTATAGTATGTGA 3321 40.89 MDEEHHQKNDSSIILRTTVPFIEIDSLFIDLSSCIDKPDAGNCDHFSIRGYASQMREKDWKKCWPFDFDGDYESAETISLLPPFHVPQFRWWRCQNCRKETPAGVEKFSNLDMPDAIEAVANASTNVCNLNHPPSFTRDEVDSRWILNTEFPIATSVMPEVESNLMLEQNRSDPVYRESVKNSKLLCGNEVAEVELGLRNLKVIDENLEGFDDEEQKIAHNEQTEVTRSSSGFKVIDQACKSERQRFPADIDGSYATASEHTEISVENDTQGHHIDKSGSLHRRKARKVRLLTELLNENENVKTNHIDTEESPSHGTSEKSEGLKDLSASRCTVAAKKNVRCSGQTSKSKMPLDEDCLAAETSSSYNPISNPSKRKSKMPVIDDRRGFSWSNSMPRRDSASKEVELRNNDPLVVSCSSVPDECSEGLHLSLSSNLATARNDKKSIFETEDGSHSLSSWQGRASVVRIKDSKAKKLKDSNVPFNYSDTFSRQVGHGGVNSKITSGRMHLQNGKQNSNSQANDDSWSQLQAMDNSGVNKVEKSVQEHLAAQMKQSEHTVGKISEQRALDDIPMEIVELMAKNQYERCLDNTRNSKSLSKTSSKKARIMNFSYVCGSSDSLQEKNIPKWKPQVRNGRNNLHTVGDNVAYGKQGSGNYFSHTEGGHFNIDHLRQTIIPPEYSTFGHSQNKSSNPVKFLARSTSEKACSQYSQYPGGVEDQESSHYRAQSFRVNNAHHPVSQNNEGVAHLWNEVPPNHHSYIPTTPRKVASQSTSVTANKNYPESSSRGGMNRGHNFKFFNPKVTNLEKDDGNYGLENFSRTSAKYPFYCHSNGIELPQNPRGSLDLYSNETMSAMHLLSLMDAGMQRGEMHENPKFNKKNFPHDHKAKDSSGLDVGLHKAYDTINYSSDYYGEIHPLKKSHDCYHRPSVGGASISPPMGNESHEIVSDLTGKVALQCKQKDKTKCSTSTWNRAQKSQKSVLTSGQGSSEGVFPIHSLQKKSGGPSSSLVSMSGYPRLENPGQCIIERHGTKRMLEHSKVSSEFGICRINKNPAEFSIPEAGNVYMIGAEDLQFSKRISENTSDLNNMDGRKRKRNTKHAVVKQHALHYSM 1106
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1285674 1293082 + MELO3C003457.2.1 Cme04g00171 324432

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00171 1106 PANTHER PROTEIN EMBRYONIC FLOWER 1 6 1096 IPR034583 GO:0009910|GO:0045892|GO:0048367
Cme04g00171 1106 MobiDBLite consensus disorder prediction 761 790 - -
Cme04g00171 1106 MobiDBLite consensus disorder prediction 964 1005 - -
Cme04g00171 1106 MobiDBLite consensus disorder prediction 302 326 - -
Cme04g00171 1106 PANTHER PROTEIN EMBRYONIC FLOWER 1 6 1096 - -
Cme04g00171 1106 MobiDBLite consensus disorder prediction 761 787 - -
Cme04g00171 1106 MobiDBLite consensus disorder prediction 263 283 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00171 - - - csv:101221202 1384.78
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme03g01733 Cme04g00171 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01733 Cme-Chr3:25915784 Cme04g00171 Cme-Chr4:1285674 1.90E-26 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g314 . . . . Bpe02g01176 . . . . . Cma01g01433 . Car09g00566 . . Cpe07g00222 . Bhi04g00833 . . . Hepe10g0350 . Lcy13g1395 . . . . . . . . . Cone17ag1115 Cone20ag0605 Lsi04g02336 Csa03g04557 Chy04g00145 Cme03g01733 Blo17g00076 . Bda01g00931 Bda13g01337 Bpe14g00510 . . . . Cmo01g01482 Cmo09g00622 Cma09g00640 Cma12g00259 . . . Cpe02g00515 Bhi09g02589 Tan01g3941 . . Hepe01g2227 Mch11g0777 . Cla08g01230 Cam08g1689 Cec08g1268 Cco08g1389 Clacu08g1387 . Cre08g1172 Lsi08g01093 . Chy03g01239 Cme04g00171
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001356 2 9 2 2 2 1 4 2 2 2 2 2 4 2 2 3 2 2 3 2 2 2 2 2 2 2 2 3 3 1 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00171 Cme_Chr04 FPKM 5.358343 5.358163 9.667756 10.166932 18.431297 15.947177 18.725695 7.377182 7.010795 8.857578