Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00174 ATGGTTTCAGTGAGCTCATGCTTAGCAAAATGTTCATCAACTCGGCTAGAAAACATAGATGAAAATGGCCCTCCAAGTTGGTTACCAGGTTCAAGTGTTCTACCTGAAACTCCAATCGAGTCCATGGAGTACCTTGGCAGATCTTGGAGTCTTTCTGCTAAAGAGCTCTCCAAGGCACTTTCCACTGCCCATGATGAACCAAGTCATCTTCAAAGTTCTGTGGTTGGCTTTCTTAGTGTTGAACCAAATGATTCAAAATCCACGGTCTTGAGGGAACCGCTACTTCGGCACTTACCCAGTGGAGACAGTCCTCCAGCTTCACCAAGAGGAAGTGACGAAATGAAGGAACTGTTGTTACTTCACCAAGCGTTGAACCCAGAGTTCTTTTCCAACCAGCAACTGCTTGGAAATGGGCTATATAAGAGCATATTAAGAGGAAATAAAACACTGGGAAGGTGGATGAAGGATCAAAAGGAGAGAAAGAAGCAGGAAATCAGAACACAGAATGCTCAATTACATGCAGCTGTATCTGTTGCAGGTGTTGCTGCCTCAGTAGCAGCATTTATAGCATCACTCGTGTCACGAGAAACATCATCGGGTAATCAGAACTGGCCATTAAAGACATCAGCAGCCATAGCTTCTGCAGCTGCTCTAGTTGCATCTCATTGCATAGAGATGGCAGAGGAAATGGGAGCCAGCCATGATCATATCTTGAATGTAGTTAACTCTGCAATCAATGCTAAAACTAATGGAGATATAATGACCCTTACAGCAGGAGCAGCTACAGCTTTAAGAGGAGCTGCAACCCTCAGGACGAGGCTTGAGAAAGGGTTGGGAGCCACAAACTTTGGGGTGGGTGAGGATAAGGTTGAAGAAGAAGGGAAAGAATCAAACGTCTTGTTAGCAATCAACTATGTTTCCAGAGGAGGAGAGCTTCTCAAACGCACAAGGAAAGTTATAATCTCGGGTGTAAACTGCGACGTTGCAGCATGGCCAGGGCGGGAAAGGGAAAGGGAAACGGATGGAGAGCAGCAGAGGGCATACTTCGGAATTGTAACAACAGATAGAACAATAGAGTTTGAATGCAGTGGGAAAGGAGAAAAACAAATGTGGATTGAGGGGATACAATATATGATGAACTTTCGTGCTTACGTCCCTGCCAAGCATCTGACAGGCCCTCTATGGCTATCCAACACTGCCAAGCATTCATGGGACCAACCTGCTTCCTCCCTCCTCCAAATCCTGATGGTGGTGTCCTCAGAGCCACTGAGCAGCAGGCTCTCCACCACCGCCAGACACAGAAACCCCAAACCAGTGGCCTGGGAGGAATCCCCCATGATTATATCTAAAAGAAACCTTCTGCTTTGCCCAAATGTGCTTAAAACAAGGGCGTTAGCAGGGGAAGTTTGGAACTTGAGTGTCATTGTAAGAGTATGGGAGGGCCAAATCTTGACGGTTCCATCTGAGGAACAGGTGAAGAGAGAACCGTCGTTTTGGTTGATGGTTAAGGAGTTGACTTTTGTGTTCGTGTGGGATGAAGGAGTCAACGCATATACGGTCAGAGATTGTGAAATTCCATATTCGGATTCTTAG 1593 46.14 MVSVSSCLAKCSSTRLENIDENGPPSWLPGSSVLPETPIESMEYLGRSWSLSAKELSKALSTAHDEPSHLQSSVVGFLSVEPNDSKSTVLREPLLRHLPSGDSPPASPRGSDEMKELLLLHQALNPEFFSNQQLLGNGLYKSILRGNKTLGRWMKDQKERKKQEIRTQNAQLHAAVSVAGVAASVAAFIASLVSRETSSGNQNWPLKTSAAIASAAALVASHCIEMAEEMGASHDHILNVVNSAINAKTNGDIMTLTAGAATALRGAATLRTRLEKGLGATNFGVGEDKVEEEGKESNVLLAINYVSRGGELLKRTRKVIISGVNCDVAAWPGRERERETDGEQQRAYFGIVTTDRTIEFECSGKGEKQMWIEGIQYMMNFRAYVPAKHLTGPLWLSNTAKHSWDQPASSLLQILMVVSSEPLSSRLSTTARHRNPKPVAWEESPMIISKRNLLLCPNVLKTRALAGEVWNLSVIVRVWEGQILTVPSEEQVKREPSFWLMVKELTFVFVWDEGVNAYTVRDCEIPYSDS 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1307787 1310895 + MELO3C003460.2.1 Cme04g00174 324435

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00174 530 Pfam Auxin canalisation 35 279 IPR008546 -
Cme04g00174 530 Pfam Plant pleckstrin homology-like region 299 380 IPR013666 -
Cme04g00174 530 PANTHER PHOSPHOINOSITIDE BINDING PROTEIN 10 318 - -
Cme04g00174 530 PANTHER EXPRESSED PROTEIN 316 383 IPR040269 -
Cme04g00174 530 PANTHER EXPRESSED PROTEIN 10 318 IPR040269 -
Cme04g00174 530 PANTHER PHOSPHOINOSITIDE BINDING PROTEIN 316 383 - -
Cme04g00174 530 Coils Coil 155 175 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00174 - - - csv:101221437 658.677
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01004 Cme-Chr2:15001146 Cme04g00174 Cme-Chr4:1307787 5.94E-16 dispersed
Cme04g00174 Cme-Chr4:1307787 Cme06g00578 Cme-Chr6:3677221 6.83E-25 dispersed
Cme04g00174 Cme-Chr4:1307787 Cme05g00481 Cme-Chr5:4458640 2.37E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g305 . Blo12g00757 . . . . Bma04g00405 . . . Cma01g01434 . Car09g00562 . . . . . . . . . . . . . . . . . . . . . Cone20ag0601 Lsi04g02333 Csa03g04553 Chy04g00148 . . . . . . Bpe04g00396 . . Sed01g3987 Cmo01g01483 Cmo09g00617 Cma09g00636 . . . . Cpe02g00513 Bhi09g02582 Tan01g3937 Cmetu09g1599 . Hepe01g2223 Mch11g0774 . . . . . . . . . . . Cme04g00174
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010810 0 1 1 1 1 0 2 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 0 1 3 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00174 Cme_Chr04 FPKM 38.523712 39.237045 23.897232 22.903349 54.480923 75.620949 52.725601 23.534105 25.319483 22.41256