Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00175 ATGGGGGATTCCTCCCAGGCCACTGGTTTGGGGTTTCTGTGTCTGGCGGTGGTGGAGAGCCTGCTGCTCAGTGGCTCTGAGGACACCACCATCAGGATTTGGAGGAGGGAGGAAGCAGGTTGGTCCCATGAATGCTTGGCAGTGTTGGATAGCCATAGAGGGCCTGTCAGATGCTTGGCAGGGACCTTGGAAACCATGGAAAACAGAGTAATGAACAAGATGGAGACCAGTGTTTTGGTTTATAGTGGGAGTTTGGATCAGACGTTTAAGGTTTGGGGAGTGAAGGTTTTTTTGAACCATAATAATCAAGACAAAAAGGTATTAATGGAGTATCAGGAGGAGGAGGGGGAGGAGGACTTGAAGATGAAGAAGCTTTATGAAACGAGCCCTGTCTTGTCTCCTTCTTGGGTTCAGAAAAAGCTTCAACCTAATTATTTCTGA 441 47.85 MGDSSQATGLGFLCLAVVESLLLSGSEDTTIRIWRREEAGWSHECLAVLDSHRGPVRCLAGTLETMENRVMNKMETSVLVYSGSLDQTFKVWGVKVFLNHNNQDKKVLMEYQEEEGEEDLKMKKLYETSPVLSPSWVQKKLQPNYF 146
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1310169 1310609 - MELO3C003461.2.1 Cme04g00175 324436

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00175 146 ProSiteProfiles Trp-Asp (WD) repeats profile. 20 34 IPR001680 GO:0005515
Cme04g00175 146 SMART WD40_4 2 35 IPR001680 GO:0005515
Cme04g00175 146 SMART WD40_4 42 93 IPR001680 GO:0005515
Cme04g00175 146 PANTHER OS01G0232200 PROTEIN 8 140 - -
Cme04g00175 146 Gene3D - 3 132 IPR015943 GO:0005515
Cme04g00175 146 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 8 140 IPR045182 -
Cme04g00175 146 SUPERFAMILY WD40 repeat-like 14 94 IPR036322 GO:0005515
Cme04g00175 146 Pfam WD domain, G-beta repeat 44 92 IPR001680 GO:0005515
Cme04g00175 146 Pfam WD domain, G-beta repeat 18 34 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00175 - - - cmo:103504006 299.671
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00175 Cme-Chr4:1310169 Cme04g01119 Cme-Chr4:15249717 1.58E-29 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g302 Blo01g01774 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed12g1397 Cmo01g01485 . . . . . . . Bhi09g02581 Tan01g3936 Cmetu04g0169 . . Mch11g0772 . . . . . . . . . . . Cme04g00175
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004018 2 2 2 1 0 1 0 2 1 3 1 1 1 2 3 2 1 2 1 1 1 2 1 2 0 0 2 1 2 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00175 Cme_Chr04 FPKM 18.908619 20.602072 20.662359 22.113464 6.667759 5.431365 6.87815 30.282225 28.42037 31.909267