Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00176 ATGATGATGAAGAAGATGATTATTCTTCCAAATTGTTCTCTTAATCAAAAGCCTTCCATTCATCCACCTTCAAAGTTGCCCCATTTCTCTTCTTCAAATTTGTCGATAATAATCCCAACGGAGAAGGTGAAGAAAACTGATCGGGAGATTATTCCTTTGAAAGTTGATGTTTTTAAAAAGCTGAAAACAACATGGATGAAACTGTTGGATGGGTTTGTTGATTCAGTTTTTGAATTCTCTGATCAAACCCTTCACCCAAATCAGATCAACTTTGCACCGGTGGAAGAGATGGGATCGGCGGTTACCGTCACCAACATCCAAGGAACCCTCCCACAAGACTTTCCTCACGGAGTCTACATAAGAAATGGAGGAAATCCATTGTTTGGAGGACTGAAATGGGTGAAATCGATATTTGGAGAATCGAGTTTTATTTGGGTGGAAGGAGAAGGAATGCTTCATGCCTTGTATTTCAAAAAGGCCAGCAATGGGAAATCATGGGAAGTATTATACAATAACAGATTTGTCGAAACTGATAGTTTCCGTTTAGAAAAACTTGAGAAAAAACGACCATGCTTTCTTCCAACGGTTGAAGGCGATTCAGTTGCTGTTCTCTTTGCCTTTTTACTCAACTGGGTTAGATTTGGGAAATTCAACAAAGACATTAGCAATACAAATGTATTTGAGCACTCGGGTAAATTTTACTCAATTGCTGAAAATCATTTGCCACACCAAATAGATATCAACACTCTCCATACTTTGGGGAATTGGGATCTCGATGCCACTGCTTGGAACAATCGCCCATTTACGAGTCATCCAAAGAAAGCACCGGAAACCGGAGAGCTGGTGATCATGGGCGTCACTTCAACCAAACCCTTCATGGAAGTGGGAATTATTTCTGAAGATGGAAAGCGAATGGTTCATAAAGTGGATGTCAAACTCAGTAGAAGTAGTCTTAGCCATGAAATTGGTGTCACAAAAAGGTACAACGTGATATTGGATTACGCACTAACCATGGACTTCAACCGACTTATCAGAGGCGGACCATTCTTAAAATACGACAAGGAAGGGTACAGTAGAATAGGAGTAATGCCTCGTTATGGAGACAGTGATTCAATTAAATGGTTTAATGTGAAACCCAATTGCTGCATGCATCTTTTCAACTGCTTCGAACTCAACCAACACGAGGTTGTGGTGTGGGGATGTAGAGCTAATGATTCAGTTATACCTGGACCTGAGAAAGGATTGAACAAATTTGAATGGTTCTCTCAAAGATTTAATAATCAAAACAACAAGATTGTTGTTAATGAGGAGGAGGATAACAATGGTGGTTCTTTGCTTCCTGTTGCTTATCAATGGAGGCTCAACCTCAGAACAGGAGAGGTCAAAGAGAAATGTCTCATTCATCAATCAATCTTCATGGATTTCCCCTTCATTAACTTACGTTTCACTGGTCTTCCTAACAAATTTGGTTATGCTCAACTTCTCCACTCCTCTGCTAGTTCTAATTCAGGGATGTTCAAATTTGGAGGGTTGGCCAAGTTGCAGTTTCAACAGCATACGAGTAATGATGAATTTTCATTGGATGATGAGGAGATAAAAGTGGAATGCCATATGTTAGAGGAGAACTCATACTGCAGTGGAGCTTCATTTGTTCCCAGAGAAAATGGAGAGGAAGAAGATGATGGTTGGATAATTGCTCATGTTCACAATGAGATTACTAATACTTCTCAGACCAACAAAAACATTCTAACAGCAACCACAAAACTGATTGTGTGGGCAGCTCTTGCTCGAATAAATTCTCCACACATTATTCTACGACTGGCCTGGCGAATGCCATGGGGCAGTCTCCACTGCAACAAGTCGTGTAATTTAGTGAGCATAATGGTTGAAGATGAGAAGAAAAGTGATTACGAGTCCCGACAACAACAACAAGAAGCTTGGTCAGATGAAAGAACAGTTAAGGGAATGAAGAATAATAATAATTTGCATCATTATCACTGCATAGGCTAG 2010 40.0 MMMKKMIILPNCSLNQKPSIHPPSKLPHFSSSNLSIIIPTEKVKKTDREIIPLKVDVFKKLKTTWMKLLDGFVDSVFEFSDQTLHPNQINFAPVEEMGSAVTVTNIQGTLPQDFPHGVYIRNGGNPLFGGLKWVKSIFGESSFIWVEGEGMLHALYFKKASNGKSWEVLYNNRFVETDSFRLEKLEKKRPCFLPTVEGDSVAVLFAFLLNWVRFGKFNKDISNTNVFEHSGKFYSIAENHLPHQIDINTLHTLGNWDLDATAWNNRPFTSHPKKAPETGELVIMGVTSTKPFMEVGIISEDGKRMVHKVDVKLSRSSLSHEIGVTKRYNVILDYALTMDFNRLIRGGPFLKYDKEGYSRIGVMPRYGDSDSIKWFNVKPNCCMHLFNCFELNQHEVVVWGCRANDSVIPGPEKGLNKFEWFSQRFNNQNNKIVVNEEEDNNGGSLLPVAYQWRLNLRTGEVKEKCLIHQSIFMDFPFINLRFTGLPNKFGYAQLLHSSASSNSGMFKFGGLAKLQFQQHTSNDEFSLDDEEIKVECHMLEENSYCSGASFVPRENGEEEDDGWIIAHVHNEITNTSQTNKNILTATTKLIVWAALARINSPHIILRLAWRMPWGSLHCNKSCNLVSIMVEDEKKSDYESRQQQQEAWSDERTVKGMKNNNNLHHYHCIG 669
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1311936 1316293 - MELO3C003462.2.1 Cme04g00176 324437

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00176 669 PANTHER BETA-CAROTENE DIOXYGENASE 52 578 IPR004294 GO:0016702
Cme04g00176 669 PANTHER OS06G0162550 PROTEIN 52 578 - -
Cme04g00176 669 Pfam Retinal pigment epithelial membrane protein 92 587 IPR004294 GO:0016702
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00176 - - - cmo:103503600 1392.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00176 Cme-Chr4:1311936 Cme07g01412 Cme-Chr7:19784617 7.61E-39 dispersed
Cme04g00176 Cme-Chr4:1311936 Cme08g00133 Cme-Chr8:975451 3.20E-28 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g297 . . . . . . . . . . Cma01g01436 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo01g01486 . . . . . . Cpe02g00512 . . . . . . . . . . . . . . . . . Cme04g00176
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005967 1 1 1 1 0 0 1 1 1 1 1 1 1 1 2 1 1 3 1 1 2 1 1 2 1 1 1 1 1 4 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00176 Cme_Chr04 FPKM 1.797775 2.528449 13.479343 12.558112 9.32748 10.402043 9.006795 11.651765 11.427891 10.273107