Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00177 ATGTCACCAACAAATCAACAATCTCAAATCACTCGATCCAATGACGATAACAACAGCAGCAGCAGCAGCAGCAGCAAGCGGGTTCGAGCATCCGATTCAATCTATCGCGGCGTGAGAATGCGAGCTTGGGGCAAATGGGTGTCCGAAATCCGTGAGCCACGCAAGAAATCCCGCATTTGGCTCGGTACTTTCCCTACCCCTGAAATGGCCGCTCGAGCCCACGACGTTGCCGCTTTGTCCATTAAAGGTAACTCCGCCATTCTTAACTTCCCTGAACTCGCTCACTCTCTTCCTCGTCCTGTCTCCCTCGCCCCTCGTGACATTCAAGCCGCTGCTGCTAAAGCCGCTCACATGGACTTCAACTTTCATTACTCTTCTAATCCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTTATCTGTTTCCACTTCTTTATCTCCTTCTTCGCCTTCCTCCTCCACCCAGCCTGACGACGACGACCACGAACTCACCGAGATCGTTAAACTCCCTACTCTCGCTTCCTCCAACTATGACGACCACGAATTCGTTCTCATGGACTCCACCGAGGGATGGGTCTATCCACCACCTTGGTTACGAACCATTGAAGATTATTATTACGGCTACCATACCAACAATATTAACGATGAATTGGGAATTGGTGATCATAATCATAGTAATTTGTCGTGGGATTATTAA 699 48.5 MSPTNQQSQITRSNDDNNSSSSSSSKRVRASDSIYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLPRPVSLAPRDIQAAAAKAAHMDFNFHYSSNPSSSSSSSSSSSLSVSTSLSPSSPSSSTQPDDDDHELTEIVKLPTLASSNYDDHEFVLMDSTEGWVYPPPWLRTIEDYYYGYHTNNINDELGIGDHNHSNLSWDY 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1321278 1321976 + MELO3C003463.2.1 Cme04g00177 324438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00177 232 SUPERFAMILY DNA-binding domain 33 92 IPR016177 GO:0003677
Cme04g00177 232 MobiDBLite consensus disorder prediction 1 30 - -
Cme04g00177 232 CDD AP2 33 93 IPR001471 GO:0003700|GO:0006355
Cme04g00177 232 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Cme04g00177 232 PRINTS Ethylene responsive element binding protein signature 57 73 IPR001471 GO:0003700|GO:0006355
Cme04g00177 232 MobiDBLite consensus disorder prediction 128 161 - -
Cme04g00177 232 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Cme04g00177 232 MobiDBLite consensus disorder prediction 128 155 - -
Cme04g00177 232 Gene3D AP2/ERF domain 34 92 IPR036955 GO:0003700|GO:0006355
Cme04g00177 232 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Cme04g00177 232 MobiDBLite consensus disorder prediction 1 31 - -
Cme04g00177 232 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 6 214 - -
Cme04g00177 232 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 6 214 - -
Cme04g00177 232 Pfam AP2 domain 34 83 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01473 Cme-Chr2:21525077 Cme04g00177 Cme-Chr4:1321278 1.87E-53 dispersed
Cme04g00177 Cme-Chr4:1321278 Cme05g01995 Cme-Chr5:28458946 2.73E-48 dispersed
Cme07g00862 Cme-Chr7:8608626 Cme04g00177 Cme-Chr4:1321278 4.67E-25 dispersed
Cme11g02291 Cme-Chr11:29999599 Cme04g00177 Cme-Chr4:1321278 1.30E-39 transposed
Cme03g01743 Cme-Chr3:25983034 Cme04g00177 Cme-Chr4:1321278 4.29E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41136 PF00847 AP2 8.70E-14 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00177 K09286 - csv:101217333 348.206