Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00180 ATGGAAGGACCCGAATATTTCCAGCCCGGTTTTTCCTCTCAATTCTCCACCGAAGACCGTCAGTCCTCCGATGCAAATAAAACCACCGCCGCCGCCGTACCTCCCACTACTGCTGACCATTTCATCGTCGAGGACCTTTTGGACTTTTCTAATGACGATGACGTTGTCTTCACCGATGGAGCTTTTGATAACCAAACCCCTACCTCTACCGACTCCTCCTCTCTTACCTTACTCGATTCATGCAATTCTTACCCCAATACCGGCAATGCCCACAACTATCATTTCGCCGACGCTAATTTCTCCACTGACCTTGGTGTTCCGTACGATGACTTGGCCGAGCTGGAATGGCTTTCCAATTTCGTGGAAGATTCTTTCTCCACCGACGATTTGGAGAAGCTGAGTTTGATTTCCGGGATGAATTCCCAGACTGACGTCCATGACGATGACGCCTCAAAAACTCGAGAATTCCAGAGCGGATTCAACCCCCGAAACCACTCACCCGCTTTTCGCCACGAAATGTCCGTAGTTCCGGCGAAAGCCGCTCGTAGCAAGCGGTCTAGGGCGGCACCTTGCATATGGAATTCCCGATTATCCGTACTCTCTCCCACAAATTCCTCTTCCGAAACCGACGTTGTCGTCACGCTTACGCCACATCCAAACACCGCCAAGAAAACCACGAAGAAGAAAGAAATTCCGGACGACACGTCGTCCGCCGCCGGTAATAACGGGGAAGGACGTAAATGTCTCCATTGTGCCACCGACAAAACGCCCCAGTGGCGAACGGGGCCAATGGGTCCAAAGACGTTGTGTAATGCTTGTGGGGTCCGGTACAAATCCGGTCGTTTGGTACCGGAATACCGACCGGCGGCGAGCCCGACGTTTGTACTGACGAAACACTCAAATTCTCACAGGAAGGTTATGGAACTCCGGCGACAAAAGGAAATGATGAGAGCACAGCAACAACAACAGTATCTTCATCATGAGAGTATGGGGTTTGATCATGTATCAAACGACGACGATTATTTGATCCATCAACACATAGGCCCACTCTATCAATAG 1059 50.61 MEGPEYFQPGFSSQFSTEDRQSSDANKTTAAAVPPTTADHFIVEDLLDFSNDDDVVFTDGAFDNQTPTSTDSSSLTLLDSCNSYPNTGNAHNYHFADANFSTDLGVPYDDLAELEWLSNFVEDSFSTDDLEKLSLISGMNSQTDVHDDDASKTREFQSGFNPRNHSPAFRHEMSVVPAKAARSKRSRAAPCIWNSRLSVLSPTNSSSETDVVVTLTPHPNTAKKTTKKKEIPDDTSSAAGNNGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKEMMRAQQQQQYLHHESMGFDHVSNDDDYLIHQHIGPLYQ 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1341476 1343113 - MELO3C003466.2.1 Cme04g00180 324441

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00180 352 PANTHER GATA TRANSCRIPTION FACTOR 1 351 - -
Cme04g00180 352 ProSitePatterns GATA-type zinc finger domain. 248 273 IPR000679 GO:0006355|GO:0043565
Cme04g00180 352 MobiDBLite consensus disorder prediction 219 243 - -
Cme04g00180 352 MobiDBLite consensus disorder prediction 9 31 - -
Cme04g00180 352 PIRSF Txn_fac_GATA_plant 22 338 IPR016679 GO:0003677|GO:0005634|GO:0045893
Cme04g00180 352 SMART GATA_3 242 292 IPR000679 GO:0006355|GO:0043565
Cme04g00180 352 MobiDBLite consensus disorder prediction 1 31 - -
Cme04g00180 352 Gene3D - 243 327 IPR013088 GO:0006355|GO:0008270
Cme04g00180 352 Pfam GATA zinc finger 248 281 IPR000679 GO:0006355|GO:0043565
Cme04g00180 352 PANTHER GATA TRANSCRIPTION FACTOR 1 351 - -
Cme04g00180 352 CDD ZnF_GATA 247 294 IPR000679 GO:0006355|GO:0043565
Cme04g00180 352 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 243 306 - -
Cme04g00180 352 ProSiteProfiles GATA-type zinc finger domain profile. 242 278 IPR000679 GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00180 - - - cmo:103503604 682.559
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme03g01757 Cme04g00180 CCT
Cme03g01757 Cme04g00180 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01757 Cme-Chr3:26086792 Cme04g00180 Cme-Chr4:1341476 5.87E-117 dispersed
Cme04g00180 Cme-Chr4:1341476 Cme04g01124 Cme-Chr4:15303307 6.44E-91 dispersed
Cme11g00170 Cme-Chr11:1826644 Cme04g00180 Cme-Chr4:1341476 2.71E-34 dispersed
Cme04g00180 Cme-Chr4:1341476 Cme01g02907 Cme-Chr1:35749345 2.29E-96 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g279 Blo01g01777 . . Bda03g00433 . . Bma04g00410 . Cmo05g00609 Cmo12g00198 . . Car09g00560 Car12g00226 . Cpe07g00206 Cpe06g00489 . . . . . . . . . . . . . . . . . . Lsi04g02328 Csa03g04547 Chy04g00155 Cme03g01757 . . . . . . . . Sed02g0905 . Cmo09g00615 Cma09g00633 Cma12g00243 . . Cpe11g00511 . Bhi09g02574 Tan01g3930 Cmetu04g2325 . Hepe01g2218 Mch11g0766 . . . . . . . . Lsi08g01074 Csa02g02256 Chy03g01261 Cme04g00180
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002406 3 2 1 1 0 1 2 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 4 2 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41137 PF00320 GATA 3.20E-15 CL0167 Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00180 Cme_Chr04 FPKM 1.912676 1.597552 3.963304 3.994248 8.641776 6.947686 7.83291 5.83709 6.873069 5.991629