Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00182 ATGATGGCTGTGACCTCTGCCTGCAAGGACGCTGCTAGCAAGATGAGCAGCTTGGATAATGGGAAGTACGTTAGGTACACACCGGAGCAAGTGGAAGCACTTGAGAGGCTTTATTATGAATGCCCAAAACCCAGTTCTATGCGCCGCCAACAGCTTATAAGGGAGTGCCCAATTCTCTCCAACATCGAACCCAAACAGATCAAAGTTTGGTTCCAAAATCGGAGATGTCGAGAGAAGCAGAGGAAGGAAGCATCACGCCTTCAAACTGTGAACAGGAAACTGACAGCGATGAATAGACTCCTAATGGAGGAAAACGATAGGTTGCAGAAACAAGTGTCACAACTTGTGTATGAGAACAGCTATTTTCGTCAACAAACCCAGAATGCGACCTTAGCCACCACTGATACAAGTTGCGAGTCAGTGGTGACAAGTGGTCAACAGAATTTGACTCCGCCGCATCCACCAAAGGATGCCAGTCCCGCAGGACTTTTGTCCATTGCGGAGGAGACTTTAGCAGAGTTTCTTTCAAAGGCTACTGGAACTGCTGTGGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGATGCACTGGAGTTGCTGCTCGTGCATGTGGACTTGTGGGTCTAGAACCTACAAGAGTGGCTGAAATTCTTAAAGATTGGCCTTCTTGGTTTCGCGATTGCCGTGCCGTTGATGTTCTAAATGTCCTATCTACTGGAAATGGAGGAACCATTGAGCTTCTGTACATGCAGCTCTATGCACCTACCACTTTGGCACCTGCTCGTGATTTCTGGCTGCTGCGATACACATCGGTTTTGGAGGATGGTAGTCTTGTGGTCTGTGAAAGATCTCTTAACAATACTCAGAATGGTCCAAGTATGCCTCCAGTCCAAAACTTTGTAAGAGCAGAAATGCTACCAAGTGGCTATTTGATAAGACCTTGTGAAGGTGGTGGATCAATAATCCATATAGTCGATCACATGGACTTAGAACCTTGTAGCGTTCCTGAAGTATTGCGGCCATTATACAAGTCATCTACTCTGCTTGCTCAGAAGAACACAATGGCAGCATTACGCTTGTTGAGACAGATTTCGCAAGAAGTTTCTCAACCAAATGTTACTGGTTGGGGAAGAAGACCTGCTGCACTTCGTGCTCTTAGTCAGAAATTGAGCAGAGGTTTCAACGAAGCAGTTAATGGGTTTACAGATGAGGGATGGTCTTTGTTAGAAAATGATGGCGTTGATGATGTTACACTTCTTGTAAACATGTCTCATGGCAAGACAATGATGGGTGCAAATATTTCATATTCTAATGGCTTTCCATCCATGAGCAACGCTGTGCTTTGTGCCAAAGCATCAATGTTATTACAGAATGTTACTCCAGCAATGCTCATCAGGTTCTTGAGAGAACACCGATCAGAATGGGCAGACAGCAGTATTGATGCTTACTCAGCAGCAGCAATTAGGACCGGCCAATGTGGTTTACCAGGGTCTCATGCTGGAACTTTTGGGGGTCAGTTTATGGAAGTTGTTAAATTTGAAAACGTGGGCCACTATAGGGATGACATGCTTATGCCTGGTGACATTTTCCTCCTCCAACTTTGCAATGGTGTGGACGAAAATGCAGTTGGTACTTCGGCTGAGCTCATCTTTGCTCCAATTGATGCCTCTTTTTCCGATGATGCACCTATTCTACCATCTGGATTCCGCATCATTCCTCTCGATTCTGGGATGGATGCTTCAAGTCCAAACCGCACACTTGATCTTGCTTCGGCTCTTGATGTTGGACCTGCAGGGAATAGAGCTTCTGGTGATTGCGCTGGTCAATCAGGAAAATCAAAATCTGTGATGACAATTGCATTCCAATTTGTATTTGATGTTCACCTTCAAGATAATGTCGCAGCAATGGCACGGCAATATGTCAGGAGCATTATAGCATCTGTTCAAAGGGTGGCACTGGCTCTTTCCCCTTCAAATTTTGGTCCTCATGCTAACCTTCAGACACCAGCTGGTGCTCCTGAAGCACATACACTTGCTCGTTGGATCTCTCAAAGCTATAGGTGCTATATGGGCATGGAATTACTGAAAAATGAAGGAAGAGAATCCATTCTTAAATCCCTTTGGCATCACTCAGATGCAGTCATGTGCTGCTCTTTGAAGGCATTGCCAAATTTTACATTTGCAAATCAATCTGGACTTGACATGCTTGAGACAACCCTGGTGGCTCTCCAAGACATCACTCTGGAGAAGATTTTCGATGATAATGGAAAGAAAACTTTAGCTTCAGAGTTCCCACGGATAATGCAGCAGGGCTTCATTTGTCTTCAAGGCGGTGTCTGCTTATCAAGCATGGGAAGGGCAGTATCCTATGAGAAAGCTGTGGCGTGGAAGGTTTTGAATGAAGAAGAAAACGCTCACTGTATTTGTTTCATGTTTATGAACTGGTCTTTTGTTTGA 2490 45.1 MMAVTSACKDAASKMSSLDNGKYVRYTPEQVEALERLYYECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNRLLMEENDRLQKQVSQLVYENSYFRQQTQNATLATTDTSCESVVTSGQQNLTPPHPPKDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDWPSWFRDCRAVDVLNVLSTGNGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPPVQNFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPCSVPEVLRPLYKSSTLLAQKNTMAALRLLRQISQEVSQPNVTGWGRRPAALRALSQKLSRGFNEAVNGFTDEGWSLLENDGVDDVTLLVNMSHGKTMMGANISYSNGFPSMSNAVLCAKASMLLQNVTPAMLIRFLREHRSEWADSSIDAYSAAAIRTGQCGLPGSHAGTFGGQFMEVVKFENVGHYRDDMLMPGDIFLLQLCNGVDENAVGTSAELIFAPIDASFSDDAPILPSGFRIIPLDSGMDASSPNRTLDLASALDVGPAGNRASGDCAGQSGKSKSVMTIAFQFVFDVHLQDNVAAMARQYVRSIIASVQRVALALSPSNFGPHANLQTPAGAPEAHTLARWISQSYRCYMGMELLKNEGRESILKSLWHHSDAVMCCSLKALPNFTFANQSGLDMLETTLVALQDITLEKIFDDNGKKTLASEFPRIMQQGFICLQGGVCLSSMGRAVSYEKAVAWKVLNEEENAHCICFMFMNWSFV 829
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1356820 1363990 + MELO3C003468.2.1 Cme04g00182 324443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00182 829 CDD START_ArGLABRA2_like 160 375 - -
Cme04g00182 829 CDD homeodomain 22 82 IPR001356 GO:0003677
Cme04g00182 829 SUPERFAMILY Bet v1-like 165 375 - -
Cme04g00182 829 Pfam START domain 166 374 IPR002913 GO:0008289
Cme04g00182 829 SMART START_1 165 375 IPR002913 GO:0008289
Cme04g00182 829 ProSiteProfiles 'Homeobox' domain profile. 17 81 IPR001356 GO:0003677
Cme04g00182 829 ProSiteProfiles START domain profile. 156 370 IPR002913 GO:0008289
Cme04g00182 829 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 6 829 IPR044830 GO:0003700
Cme04g00182 829 Coils Coil 91 118 - -
Cme04g00182 829 Pfam MEKHLA domain 688 828 IPR013978 -
Cme04g00182 829 CDD bZIP 74 113 - -
Cme04g00182 829 SMART HOX_1 19 85 IPR001356 GO:0003677
Cme04g00182 829 Pfam Homeodomain 22 80 IPR001356 GO:0003677
Cme04g00182 829 SUPERFAMILY Homeodomain-like 21 84 IPR009057 -
Cme04g00182 829 Gene3D - 14 88 - -
Cme04g00182 829 Gene3D - 200 376 IPR023393 -
Cme04g00182 829 PANTHER CLASS III HD-ZIP PROTEIN CNA1 6 829 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02905 Cme-Chr1:35727737 Cme04g00182 Cme-Chr4:1356820 0 dispersed
Cme04g00182 Cme-Chr4:1356820 Cme12g01106 Cme-Chr12:18966772 0 dispersed
Cme04g00182 Cme-Chr4:1356820 Cme01g00416 Cme-Chr1:2932684 3.65E-31 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41138 PF01852 START 1.60E-52 CL0209 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00182 K09338 - csv:101218438 1632.46