Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00187 ATGGTCAGATGTCCTGAGCTTCTTGACCTGATCTCCAGGGACAGGGAATGGGATTTGACTAGAAATGGTGTTGGAAGTTCTGTTATTGAGAATAATAAACTTGAATTGAGACTTGGATTGCCAGGAGAAGAGGGGCTTGCAGAAGCAAGTAGTTGTTTGAATAGTAACCATGAAAATGGTGAAATCTCTCTTTCTTCTGCCAGGCCATTTTCTTCTTGTTTGAACATAAGAAGCAATAAAAGGGCTCTTTATGCAAAAACTGAAGGAATAGCAGGAGATGGAAATCGGTTGGATAGAAATGATGAATTCCAACCCCACAAGCTGATTTTCTATGAGAAAACAGCTGAGAAGGTGTCTCCTTTCACTCCTTGTCTGAGTGCTTCCTTACCATCTTCAGCTTTTCAGAGGGAAGCTCAGAAGTTATCTCAACCATCACAATCTTCATATTTGAAACATTTATTGATGCCTCAGAACTTGGATTTGGTGTCAGAGGAGCCATCAAAGCCAAAAGCAACTGAGTTGAACTCATGTCTCAACAGTAATTCAGTTCCTGCAGAATCATCTGAAACTAAACACCATGACAAAAGGGCTTCAGTTGCAGCAGCCGTTGGTTGGCCTCCCATCCCTTCTTTCAGGAAAAACTTCGCTGTTCCCCGCTCTTCAAAGCCTAACTCTCTGGAATTGTCAAAAGAAACTTTGCAGGATGAAAATGGCTCAAGATTATCTGACTGCTCCAATGGACAAATGTTTGTGAAAGTTTGTATGGATGGGGTTCCCATTGGAAGAAAACTAAATCTCCAAGCCTATAATAGTTATGATCAACTCTCTGCTGGAATAGACGAACTCTTCCACAGTCTTCTTGCAGCTCAGAGAAACTATCTAGCAGCTGAAGATGGGAGAAAGATGGAGGAAACAACTTCAGTATCTGATTCCAAACACAAAAATGGGCTGTATACTCTAGTTTACTACGATAATGAAGGGGACAGGATGCTTGTTGGTGATGTCCCATGGAAGATGTTTGTTTCCACTGTGAAGAGGCTACATTTTGGCAGTGATATCAAGCTGCAAGGTGTAAGCGCAGCCTTGGCTTTCAAGGTTGAGGCAACTGCTGTTTTCATGCACGCTATCACCATCATACATCTCCAAGCCATTGCTTTCTCAAGTGGAACTCCTAGTCGAGAAGTTACTCACAACTCACCCTTTCCTAGTTGTGGAGTTACTCATAACTCACCTTTCGGATAG 1242 42.27 MVRCPELLDLISRDREWDLTRNGVGSSVIENNKLELRLGLPGEEGLAEASSCLNSNHENGEISLSSARPFSSCLNIRSNKRALYAKTEGIAGDGNRLDRNDEFQPHKLIFYEKTAEKVSPFTPCLSASLPSSAFQREAQKLSQPSQSSYLKHLLMPQNLDLVSEEPSKPKATELNSCLNSNSVPAESSETKHHDKRASVAAAVGWPPIPSFRKNFAVPRSSKPNSLELSKETLQDENGSRLSDCSNGQMFVKVCMDGVPIGRKLNLQAYNSYDQLSAGIDELFHSLLAAQRNYLAAEDGRKMEETTSVSDSKHKNGLYTLVYYDNEGDRMLVGDVPWKMFVSTVKRLHFGSDIKLQGVSAALAFKVEATAVFMHAITIIHLQAIAFSSGTPSREVTHNSPFPSCGVTHNSPFG 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1412872 1417058 + MELO3C003473.2.1 Cme04g00187 324448

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00187 413 MobiDBLite consensus disorder prediction 219 240 - -
Cme04g00187 413 Pfam AUX/IAA family 34 348 IPR033389 -
Cme04g00187 413 PANTHER AUXIN-RESPONSIVE PROTEIN 7 348 - -
Cme04g00187 413 MobiDBLite consensus disorder prediction 164 196 - -
Cme04g00187 413 ProSiteProfiles PB1 domain profile. 248 352 IPR000270 GO:0005515
Cme04g00187 413 MobiDBLite consensus disorder prediction 169 186 - -
Cme04g00187 413 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 348 IPR003311 GO:0005634|GO:0006355
Cme04g00187 413 Gene3D - 243 364 - -
Cme04g00187 413 SUPERFAMILY CAD & PB1 domains 240 349 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00187 K14484 IAA; auxin-responsive protein IAA - csv:101219386 636.721
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00187 Cme-Chr4:1412872 Cme02g01422 Cme-Chr2:20536240 1.00E-23 dispersed
Cme04g01143 Cme-Chr4:15636357 Cme04g00187 Cme-Chr4:1412872 4.79E-43 transposed
Cme04g00187 Cme-Chr4:1412872 Cme08g00701 Cme-Chr8:4679939 3.27E-23 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g11 . . . . . . Bma04g00134 . . . Cma01g01443 . Car09g00554 . . . Cpe06g00483 . . . . . . . . . . . . . . . . . . . Csa03g04540 Chy04g00163 . . . . . . . . . Sed12g1387 . . . . . . . Cpe02g00505 Bhi09g02562 Tan01g3912 Cmetu04g3043 . Hepe01g2211 Mch11g0759 . . . . . . . . . . . Cme04g00187
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014199 0 1 0 0 0 0 2 0 0 1 0 0 0 1 1 1 0 0 2 1 1 1 1 1 1 0 1 3 4 0 23
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41139 PF02309 AUX_IAA 6.30E-53 CL0072 Cme TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00187 Cme_Chr04 FPKM 12.214851 12.10006 8.557594 8.213598 5.572429 5.901975 5.70521 0.42914 0.573255 0.754596