Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00188 ATGCTTCTCCGAGCTTCCCCTCTTCTTCGCGCCTCCCACCTTCCATTTCCCTCTGGGATTCACATGGCGCTAGCTCTCCATCTTCCTTTATATCCCAACTGTAAAACTTCCACTTCATGGCGATCTTCTTCTTCGCACTTGGTTTCTGTTTGTCAAACGAATGGTTACGACCGTATTTCGGCCAAAATAAATTTTTCACAATTTGTTCGAAATTTCTACGCTTTATCGGGTTCATACAATAAGGTACAGGCGCCTTGTGGAAGGATTTTTTGTGGACAAAGAGAGTATCGAAAGGTGAGGAGACGAGTCCCAAAGCGTAAGATTAAGGAATTAGAGCTCAATGTCAGTATCTGTATTGAAGAAGAGTTGCCGGACGACCCAGAAATTTTGAGTATTGCAGAAATGCTTCGTTTGAATGTTCCTAAGGCTCTGAAGTTTGCTCTCAACAATTTAAAGGATTCAGAATACAAAACTCGATATAGTTCAATAGATGATGTTGGTTTATTTGATAGTGTTGAGTTGTCCGTACTACTTTGTAATGACGATTTTATTCGTAAACTTAACAAAGAATGGAGGGATGAGGATCATGCCACTGATGTCCTGTCCATGTCACAGCATGTCCCGGAATTGAAGCTTCCAATTCTTATGTTAGGTGATATTGTCATTTCTGTTGAGACTGCTGCAAGGCAGGCGGAGGAAAGGGGGCACACACTCCTTGATGAAATTCGGATACTCCTGGTGCATGGATTGTTGCATCTGCTGGGATTTGATCATGAGATTAGTGAAGAGGCTGAAGAAGAAATGGAGAAGGAGGAGGAACTACTTTTGAAGAGTTTAGAATGGAGAGGGAAAGGGCTAATTCAGAGTGCAATTGATGCTGAAACCAATTCGAACTCAGCTGCAGTTGTTTCAGATGACAGGAAAAAAGAAGGCAGTCTTCGATTTTATCGCCCAAGGTTCAGCTACATTTTTTGTGATATGGATGGTACATTGCTCAATAGTAAAAGTCAAATTACTCCAACAACTGTCAGGGCTCTGAAGGAGGTCTTGTCAAGGGGTGTGAAAGTTGTTATAGCCACTGGAAAGGCTCGCCCAGCAGTAATTAGCATTTTGGAGAAGGCAGGTTTAGCTGGAAAAGATGGTGCCGTGTCTGAATTTTCTCCTGGAGTTTTCTTACAGGGACTACTCGTTTATGGTAGACAAGGCAAAGAAATTTATAGGCGGAACTTAGACCAAGATGTCTGCAGAGGGGCATGCCTTTATTCCTTAGAGAAGAAAGTTCCTCTGATTGCATTTGGTGAAGGTCGTTGCTTAACTCTATTTGATCATCCACTTGCTGATGCATTGCACACTGTATACCATGAGCCCAAGGCAGAGGTCATGTCTTCGGTTGAGAATCTTTTGGCTGCAGCTGAAATACAGAAAATTCTTTTCTTGGACACTGCCGAGGGAGTTTCACGCATCCTACGACCATACTGGTCAGAAGCTGCAGGGGAACACGCTTCAGTTGTTCAAGCTGTACCAGATATGCTTGAGATTGTCCCCCGTGGAACCTCAAAAGGTAGTGGAGTAAAAATGCTGCTCGATCATTTGGGAGTTTCTGCTGAGGAGGTAATGGCTATTGGAGATGGGGAAAACGACATTGAGATGCTCGAGTTGGCATCTCTTGGGATTGCTTTGAGTAATGGATCAGAGAAAACAAAAGCTGTTGCTAACTTAATTGGTCCTAGTAACGACGAAGATGGTGTTGCGGAGGTCATATACCGATATGCATTCTAG 1779 43.28 MLLRASPLLRASHLPFPSGIHMALALHLPLYPNCKTSTSWRSSSSHLVSVCQTNGYDRISAKINFSQFVRNFYALSGSYNKVQAPCGRIFCGQREYRKVRRRVPKRKIKELELNVSICIEEELPDDPEILSIAEMLRLNVPKALKFALNNLKDSEYKTRYSSIDDVGLFDSVELSVLLCNDDFIRKLNKEWRDEDHATDVLSMSQHVPELKLPILMLGDIVISVETAARQAEERGHTLLDEIRILLVHGLLHLLGFDHEISEEAEEEMEKEEELLLKSLEWRGKGLIQSAIDAETNSNSAAVVSDDRKKEGSLRFYRPRFSYIFCDMDGTLLNSKSQITPTTVRALKEVLSRGVKVVIATGKARPAVISILEKAGLAGKDGAVSEFSPGVFLQGLLVYGRQGKEIYRRNLDQDVCRGACLYSLEKKVPLIAFGEGRCLTLFDHPLADALHTVYHEPKAEVMSSVENLLAAAEIQKILFLDTAEGVSRILRPYWSEAAGEHASVVQAVPDMLEIVPRGTSKGSGVKMLLDHLGVSAEEVMAIGDGENDIEMLELASLGIALSNGSEKTKAVANLIGPSNDEDGVAEVIYRYAF 592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1417543 1426284 + MELO3C003474.2.1 Cme04g00188 324449

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00188 592 ProSitePatterns Hypothetical cof family signature 1. 322 333 - -
Cme04g00188 592 TIGRFAM TIGR00043: rRNA maturation RNase YbeY 173 279 IPR002036 GO:0004222|GO:0006364
Cme04g00188 592 Gene3D - 409 516 - -
Cme04g00188 592 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 170 283 - -
Cme04g00188 592 SFLD Haloacid Dehalogenase 323 591 - -
Cme04g00188 592 TIGRFAM Cof-subfamily: Cof-like hydrolase 322 587 IPR000150 GO:0016787
Cme04g00188 592 ProSitePatterns Uncharacterized protein family UPF0054 signature. 248 258 IPR020549 -
Cme04g00188 592 Hamap Endoribonuclease YbeY [ybeY]. 114 288 IPR002036 GO:0004222|GO:0006364
Cme04g00188 592 PANTHER ENDORIBONUCLEASE YBEY, CHLOROPLASTIC 30 592 - -
Cme04g00188 592 CDD HAD_Pase 323 589 - -
Cme04g00188 592 ProSitePatterns Hypothetical cof family signature 2. 541 563 - -
Cme04g00188 592 Pfam haloacid dehalogenase-like hydrolase 323 587 - -
Cme04g00188 592 Gene3D Metalloproteases ("zincins"), catalytic domain 145 281 IPR023091 GO:0004222
Cme04g00188 592 SFLD C2.B: Phosphomannomutase and Phosphatase Like 323 591 - -
Cme04g00188 592 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 322 559 IPR006379 -
Cme04g00188 592 PANTHER ENDORIBONUCLEASE YBEY, CHLOROPLASTIC 30 592 IPR002036 GO:0004222|GO:0006364
Cme04g00188 592 Gene3D - 323 587 IPR023214 -
Cme04g00188 592 Pfam Endoribonuclease YbeY 169 278 IPR002036 GO:0004222|GO:0006364
Cme04g00188 592 SUPERFAMILY HAD-like 318 590 IPR036412 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00188 - - - cmo:103503611 1102.43
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g30 . . . . . . . . . . . . Car09g00553 . . . Cpe06g00482 . . . . . . . . . . . . . . . . . . Lsi04g02320 Csa03g04539 Chy04g00164 . . . . . . . . . Sed12g1384 . . Cma09g00626 . . . . . Bhi09g02561 Tan01g3910 Cmetu04g0733 . Hepe01g2210 Mch11g0758 . . . . . . . . . . . Cme04g00188
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009056 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 2 1 4 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00188 Cme_Chr04 FPKM 4.396607 5.344999 3.327315 3.132579 1.443173 1.669255 1.355019 0.916625 0.973481 1.262387