Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00196 ATGGAGTTGGAAAATCCGGCTTCTCGGACTTCAAGTGAAGAGGGAAACAGAGGAGAACTGGAGAATGAGAAAGGGGGAGAACTAGATTTGAATGATACGAGAAATGGGAAGAAGAAGAAGAAGAAGAATGGAAATCGTTCGGTATCGTTTTATCTACCGAAGATCGGATTCGGATGTTTCAGAGTACAGCGTGATGAGGAAGGGAATATTGATATGGAGGTCGTCAATGGCTCTGGGGAGCGTCGGAAGCCCTCCCACCTTCTTATAATGGTTAACGGTCTTGTTGGCAGTGCTAAAGATTGGAAATATGCAGCACAGGAGTTTTTGAAGACGTATCCAGAAGATATTATTGTTCATTGTAGTAAACGTAATTACTCAACATTGACTCTTGATGGTGTTGATGTGATGGGAGGAAGACTAGCGGAAGAGATTTTGTTAGTTATCAAGAGACATCCAAATCTTCGAAAGATCTCCTTCTTATGTCATTCATTAGGTGGACTGATAGCAAGGTACGCCATTGCAAAGCTTTATGAGCTAAAAGAAGATGTCCAAGTAAATGGGGAGTATAACAAACACGAGTTTAGAGATGAAAGCTATGAAGATGAATTTAGAGGGAAAATTGCAGGGCTGGAACCAATTAATTTTATAACTTGTGCGACCCCACATCTTGGTTCAAGAGGGCATAAACAGGTCCCTATGTGTTGTGGCTTTTATGTCTTGGAAAAAGTAGCTGTTTGTACATCATATTTCTTTGGTAGAACTGGGAGACATTTATTTTTAATTGACAAGGACAGTGGAAACTGCCCTCTTCTTTTTCATATGGCTGGCGATCGAGAGGATCTCAAATTTTTATCTGCTTTGCAGTCGTTTAGGCGCCGTGTTACCTATGCGAATGTGCGTTACGATAACGTTGTTGGATGGAGTACATCTTCTATTAGGCATCGTTCTGAGTTGCCTAAGCTTAAAGGTTTATCAGGAGATAGCAAATATCCGTACATTGTAAATGTAGAGATGGCAAAAATTCAGAATCCTCAATTATATGTGCCATCAGAGGCTGAAGTCAATAGATTCAAGAAAAGTGATTTGGAAGAAGAAATGATCAAAGGTTTATCAAGCGTTGGTTGGGATCGGGTTGATGTTGATTTCCACAGAAGTAAACAAAGAAATGATGCCCACCTTACCATTCAGGTTAATAGGTACAGAGTCAATTCTGATGGGGCTTGTGTGATCCAACATATGATAGACAATTTTCTCTTGTAG 1260 40.24 MELENPASRTSSEEGNRGELENEKGGELDLNDTRNGKKKKKKNGNRSVSFYLPKIGFGCFRVQRDEEGNIDMEVVNGSGERRKPSHLLIMVNGLVGSAKDWKYAAQEFLKTYPEDIIVHCSKRNYSTLTLDGVDVMGGRLAEEILLVIKRHPNLRKISFLCHSLGGLIARYAIAKLYELKEDVQVNGEYNKHEFRDESYEDEFRGKIAGLEPINFITCATPHLGSRGHKQVPMCCGFYVLEKVAVCTSYFFGRTGRHLFLIDKDSGNCPLLFHMAGDREDLKFLSALQSFRRRVTYANVRYDNVVGWSTSSIRHRSELPKLKGLSGDSKYPYIVNVEMAKIQNPQLYVPSEAEVNRFKKSDLEEEMIKGLSSVGWDRVDVDFHRSKQRNDAHLTIQVNRYRVNSDGACVIQHMIDNFLL 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1456966 1461302 + MELO3C003480.2.1 Cme04g00196 324457

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00196 419 SUPERFAMILY alpha/beta-Hydrolases 86 313 IPR029058 -
Cme04g00196 419 PANTHER UNCHARACTERIZED 32 418 IPR044294 -
Cme04g00196 419 MobiDBLite consensus disorder prediction 14 36 - -
Cme04g00196 419 Pfam Putative serine esterase (DUF676) 82 309 IPR007751 -
Cme04g00196 419 Gene3D alpha/beta hydrolase 88 265 IPR029058 -
Cme04g00196 419 MobiDBLite consensus disorder prediction 1 44 - -
Cme04g00196 419 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 32 418 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00196 - - - csv:101220342 822.387
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00196 Cme-Chr4:1456966 Cme07g01812 Cme-Chr7:23556383 2.95E-115 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g588 Blo01g01781 . Bda01g00855 . Bpe02g00160 . . Bma01g02565 . . Cma01g01447 Cma09g00619 . . . Cpe06g00478 . . . . . . . . . . . . . . . Cone4ag1259 . . . Lsi04g02315 Csa03g04533 Chy04g00170 . . . Bda11g00819 . Bpe02g01094 . . . . Cmo01g01501 Cmo09g00604 . . . Car09g00549 . Cpe02g00501 Bhi09g02551 . . . . . . Cla11g01465 Cam11g1518 Cec11g1556 Cco11g1551 Clacu11g1682 Cmu11g1499 . . . . Cme04g00196
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006304 1 3 1 1 1 0 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00196 Cme_Chr04 FPKM 0.868766 0.467171 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0