Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00201 ATGTCTGCTCCATTGACTCCCTCAAAGAGATCACGTGATCGAAGCTCTGTCAAGTCTAATGGGAAAGGAAAGTGGCAAAAGTCATCGAGTTCTCGTTCGCGGCGAAATCAACCCTTCAAATTGTCTCCTGGTTATGCTGTTTTTCGTGTCCTCTTTCCTGTTTCCAGAATCGACAGCCTTGTAGGCAGAGATGGGGATGGTTTATCTAAAATTCGTGAAGAAACAGGTGTAGAAATCAGAGTAGAGGACACTATCCCTGGATGTGATGAGAGAATTGCAGTAATTGGAGGCTCTAATCAAGAAACTGAAGTGAACCCGGAAAAGAAGAGTAAGGAAGACAACAAGAATTCTGAAGTCGAGGAGAATGATGGTGATATTGCCAAGTTGAAAAAGAAGGAAGATAAAGATTCTCCTCCGGTGGAAGATGCTAAACAGAAGGAGGTTACTCATTCGCAGTTGCGAAAAGCCCTCTTTCTTGTTTCTGAGAAGATCTTTGATGAAGAACCGGAGGCAGATGGGACAGATGTTGAAGGTGATAAGCTGCCAACATTTGTCTTAAGATTGCTTGTTCTTTCTAGTCAAGTTGGGTGCCTATTGGGAAAGGGTGGCAGTGTAGTCAAACAAATGTCATCTGATAGTGGAGCGCAAATTAGAATTCTTCCCAGGGATAAACTTCCTCCATTTGTGGCGACCAATGATGAGCTAGTCCAGATTAGTGGAGGAATTGATGTGGTGAAGAAAGCTCTTGAACTTGTTTTTCAGCAGCTAATTGAAAATCCACCCAATGATAAAGATCCTGTCTCCTCAAGCAATGCTGCACAGTCATCACGTTCTTCTGGACAGTCTCTCTCTAGGGCTCATGAATCTCCTCGGGGTAGTTCCATTAATACGCATGGAGGCCCTTACTCTGTGCCTCGTGATGTTGGGAATTTTCATTCCAGTGCACCTTCTCTTGCTCCCAAACAGTATGAAGCCTGCATTCCTGGTCGAAGCAAACCTTCTCATGAAATTTTAAGTTACCGGTTATTATGCCCAACTGAGAGAGTTGGAAATGTGATTGGGAAAGGAGGAGCAATAGTCAAGACTCTTCAGCAAGACACGGGCTGTGACATCAATGTTGTTGACGGTGCCTCGGACTCAGAAGACCGCATTATACTTGTAGCTGGTCCTGCGCATCCAGATGACAGAATATCACCAGTGCAAGATGCTGTTTTTCGCGTTCAGGCCAGGATTGTCAAGGCTGCAGCAGACAGCAAGGAGCAGAACTTGGTAGCTAGGTTTCTTGTTTCCTCCAATCAAATTGGTTGTCTTCTTGGGAAAGGTGGCTCCATCATAGCTGAAATGAGAAAGTCGACGGGTGCATATATTCGTATTTTAGGAAAGGAGCAGATTCCAAAGTGTGCTGGAGAGGATGAAGAAGTGGTTCAGATAAATGGAGAGCCTGAAACCGTTCAAGATGCCATGTTTCAGATTACTACTCGGTTGAGGCATCATTTTTTCCGTGATGCTTTTCCATCAGTTAATAGTCATTCAAATCCTGCATTCATAGATAGACTTCCTTCATTTCCTTCATATTTTGGAAGGAGAGAATTATCGCCTCCAGGAATCTATTCAAGTTTAGGCCCCTCATTTCACAAGTTTGATGCTCTTAGTGGCATTCCTTCACTCAGTGATTTGCGGGATGATCGACCTCCTTTTCTTCATAGGCCAGGTGCTCCTCTGTTATCTGATAGAAAACCATGGAGCTCTCAGGGATTAGTTGAAGGTGGTGTTGGCTTGTCAGACTTTGCAGGAGGCCATCATAGAAGAATTGCTGGATTTGGAGGAGGAAATAGTCCAGCTATTATAACGAGCACCACTGTTGAAGTAGTTGTTCCACGAAACATTGTCCCTGTTATTTGTGGAGAAAATGGGGAATGTTTGAAACAGATTCGTCAGATTTCTGATGCAAAAATTACAATTACCGAGCCAAAGCAGGGAGAAGTCGAAACTATGATTATAATTTCTGGAACGCCCGAGCAGACCCATGCTGCTCAAAGTCTTATTCAAGCTTTTGTATATGATGACTACTTTCTTATCTCTGGGCCGATTGTTTTGGAGAAAGGATGTTGCACAGACGAGTATTAA 2127 43.68 MSAPLTPSKRSRDRSSVKSNGKGKWQKSSSSRSRRNQPFKLSPGYAVFRVLFPVSRIDSLVGRDGDGLSKIREETGVEIRVEDTIPGCDERIAVIGGSNQETEVNPEKKSKEDNKNSEVEENDGDIAKLKKKEDKDSPPVEDAKQKEVTHSQLRKALFLVSEKIFDEEPEADGTDVEGDKLPTFVLRLLVLSSQVGCLLGKGGSVVKQMSSDSGAQIRILPRDKLPPFVATNDELVQISGGIDVVKKALELVFQQLIENPPNDKDPVSSSNAAQSSRSSGQSLSRAHESPRGSSINTHGGPYSVPRDVGNFHSSAPSLAPKQYEACIPGRSKPSHEILSYRLLCPTERVGNVIGKGGAIVKTLQQDTGCDINVVDGASDSEDRIILVAGPAHPDDRISPVQDAVFRVQARIVKAAADSKEQNLVARFLVSSNQIGCLLGKGGSIIAEMRKSTGAYIRILGKEQIPKCAGEDEEVVQINGEPETVQDAMFQITTRLRHHFFRDAFPSVNSHSNPAFIDRLPSFPSYFGRRELSPPGIYSSLGPSFHKFDALSGIPSLSDLRDDRPPFLHRPGAPLLSDRKPWSSQGLVEGGVGLSDFAGGHHRRIAGFGGGNSPAIITSTTVEVVVPRNIVPVICGENGECLKQIRQISDAKITITEPKQGEVETMIIISGTPEQTHAAQSLIQAFVYDDYFLISGPIVLEKGCCTDEY 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1473597 1479330 + MELO3C003484.2.1 Cme04g00201 324462

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00201 708 MobiDBLite consensus disorder prediction 260 315 - -
Cme04g00201 708 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 417 501 IPR036612 GO:0003723
Cme04g00201 708 ProSiteProfiles Type-1 KH domain profile. 183 252 - -
Cme04g00201 708 Gene3D K Homology domain, type 1 45 104 IPR036612 GO:0003723
Cme04g00201 708 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 173 260 IPR036612 GO:0003723
Cme04g00201 708 MobiDBLite consensus disorder prediction 90 148 - -
Cme04g00201 708 SMART kh_6 421 496 IPR004087 GO:0003676
Cme04g00201 708 SMART kh_6 617 687 IPR004087 GO:0003676
Cme04g00201 708 SMART kh_6 44 121 IPR004087 GO:0003676
Cme04g00201 708 SMART kh_6 336 412 IPR004087 GO:0003676
Cme04g00201 708 SMART kh_6 182 257 IPR004087 GO:0003676
Cme04g00201 708 MobiDBLite consensus disorder prediction 261 300 - -
Cme04g00201 708 MobiDBLite consensus disorder prediction 1 40 - -
Cme04g00201 708 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 615 689 IPR036612 GO:0003723
Cme04g00201 708 PANTHER KH DOMAIN-CONTAINING PROTEIN HEN4-LIKE 1 558 - -
Cme04g00201 708 CDD KH-I 620 683 - -
Cme04g00201 708 Gene3D K Homology domain, type 1 338 413 IPR036612 GO:0003723
Cme04g00201 708 ProSiteProfiles Type-1 KH domain profile. 45 111 - -
Cme04g00201 708 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 1 558 - -
Cme04g00201 708 ProSiteProfiles Type-1 KH domain profile. 337 404 - -
Cme04g00201 708 Gene3D K Homology domain, type 1 616 691 IPR036612 GO:0003723
Cme04g00201 708 CDD PCBP_like_KH 185 253 - -
Cme04g00201 708 Pfam KH domain 186 252 IPR004088 GO:0003723
Cme04g00201 708 Pfam KH domain 425 491 IPR004088 GO:0003723
Cme04g00201 708 Pfam KH domain 48 101 IPR004088 GO:0003723
Cme04g00201 708 Pfam KH domain 620 683 IPR004088 GO:0003723
Cme04g00201 708 Pfam KH domain 340 390 IPR004088 GO:0003723
Cme04g00201 708 CDD PCBP_like_KH 339 408 - -
Cme04g00201 708 CDD PCBP_like_KH 424 492 - -
Cme04g00201 708 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 37 100 IPR036612 GO:0003723
Cme04g00201 708 MobiDBLite consensus disorder prediction 21 38 - -
Cme04g00201 708 ProSiteProfiles Type-1 KH domain profile. 618 682 - -
Cme04g00201 708 MobiDBLite consensus disorder prediction 104 148 - -
Cme04g00201 708 ProSiteProfiles Type-1 KH domain profile. 422 491 - -
Cme04g00201 708 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 339 413 IPR036612 GO:0003723
Cme04g00201 708 Gene3D K Homology domain, type 1 419 499 IPR036612 GO:0003723
Cme04g00201 708 Gene3D K Homology domain, type 1 182 261 IPR036612 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00201 K21444 PCBP3_4; poly(rC)-binding protein 3/4 - csv:101221201 1266.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00213 Cme-Chr1:1525721 Cme04g00201 Cme-Chr4:1473597 9.21E-98 dispersed
Cme01g02737 Cme-Chr1:34559838 Cme04g00201 Cme-Chr4:1473597 1.30E-77 dispersed
Cme04g00201 Cme-Chr4:1473597 Cme09g00254 Cme-Chr9:1938704 2.65E-73 dispersed
Cme09g00069 Cme-Chr9:523889 Cme04g00201 Cme-Chr4:1473597 2.07E-07 dispersed
Cme09g00256 Cme-Chr9:1941214 Cme04g00201 Cme-Chr4:1473597 7.25E-07 dispersed
Cme10g00116 Cme-Chr10:795474 Cme04g00201 Cme-Chr4:1473597 5.87E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g580 Blo01g01784 . . . Bpe02g00157 . . Bma01g02568 . . . Cma09g00613 . . . Cpe06g00474 . . . . . . . . . . . . . . . Cone4ag1264 Cone7ag0879 . . Lsi04g02311 Csa03g04530 Chy04g00173 . . . Bda11g00816 . . . . . Sed05g1523 Cmo01g01505 Cmo09g00601 . . . Car09g00545 . Cpe02g00498 Bhi09g02548 Tan01g3895 Cmetu04g0312 . Hepe01g2200 . . Cla11g01461 Cam11g1513 Cec11g1551 Cco11g1546 . Cmu11g1494 Cre11g1915 . . . Cme04g00201
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007521 1 1 1 1 1 0 3 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00201 Cme_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0