Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00205 ATGGCTCTCTGTTTCTACTTCTTCCTTCTTCAATTTACGATTTCTCTTGCCTTTGGGACCGATCAATCTCTGTTTTTCTCTTTGATGCAAAAGGGCGTTGTTGGGAATTCTCTGCCTTCCGATTGGACTGGAGATTCCTTCTGTAATTTCACCGGTATTACTTGTAATGAAAAGGGGTTAGTGGTGGGGATTGATCTTTCAGGCAGGGCGGTTTCCGGGAGGTTTCCGGCGGATGTTTGTTCTTATTTACCGGAGTTGAGAGTGCTGCGGCTTGGACGGAGTGGGTTACGTGGAACGTTTCCACGTGGGGTAACGAACTGCTCTGTTTTGGAAGAATTGGATATGAATTCTCTGTCTCTGATGGGGACGTTACCGGATTTCTCGCCGTTGAAAACCTTGAGGATACTCGACATGTCGTACAACAACTTCACCGGTGAGTTTCCATTGTCGGTTTTCAGTTTGACGAATCTCGAGAGTTTGAATTTCAACGAGGACAACAATTTCAACACGTGGCAGTTGCCGGAGAATGTGTCTGGGTTGACGAAGTTGAAATCGATGGTGTTAACGACTTGTATGTTGGAGGGAAGAATTCCGGCGACGATTGGGAATATGACGGCGCTCGTTGACCTTGAATTAAGCGGGAATTTCCTCACCGGAAAAATCCCAAAGGAAATCGGGAATTTGAAGAATTTGAGAGCGTTGGAGCTTTACTACAATTCATTAGTCGGCGAAATTCCAGAAGAACTTGGGAATTTAACAGAGCTCGTGGACTTGGACATGTCAGTCAACAAGTTGACCGGAAAATTACCTGAATCGATTTGTCGTCTTCCGAAACTTGAAGTTCTTCAGCTTTACAACAATTCGTTAACAGGGGAGATTCCAATTTCAATTTCAAATTCAACGACACTCACTATGTTATCACTTTACGACAACTACATGACGGGACAAGTTCCAAGTAATTTGGGTCAATTCTCACCTATGGTGGTTCTCGACTTGTCGGAAAATTATTTCTCCGGTCCATTACCGACAGATGTCTGTGGAGAAGGTAAACTAATGTATTTCCTTGTATTGGAGAATAAATTTTCCGGTCAAATCCCACCGTCGTACGGTACATGTCAATCCCTTTTACGGTTTCGTGTCAGTTCGAATAATTTAGAAGGTCCGGTGCCGGTGGGACTTTTGGGTCTTCCTCATGTTTCGATTATTGATTTTGGTAACAATAATTTAAGCGGTGAAATTCCCAATTCTTTTGTTAAAGCCAGGAATCTTTCTGAATTGTTTATGCAGAGTAATAAAATTTCCGGCGTGTTACCGCCGGAGATTTCAAAAGCTACCAATTTAGTTAAGATCGATCTTAGCAACAATCTCTTATCTGGTCCAATTCCTTCAGAAATTGGGAACCTCAGAAAGCTTAATCTGTTGCTTTTACAAGGAAATCACTTGAATTCTTCAATACCCACTTCACTTTCCGATCTTAAATCTTTGAATGTTCTTGATTTGTCCGATAATCGATTAACCGGCAACATCCCGGAAAGTCTCTGTGAACTGTTACCAAATTCAATCAATTTCTCAAACAATCAACTCTCCGGTCCAATTCCTCTGTCTTTAATCAAAGGTGGATTAGTGGAAAGCTTTTCCGGCAACCCAGGATTATGCGTTTCTGTTTACTTAGATTCATCCGATCAGAAATTCCCAATTTGTTCTCAATACAACAACAAAAAACGATTGAACTCCATCTGGGCAATTGGAATATCAGGTTTTATAATCTTGATCGGAGCTGCTCTGTATTTACGACGACGTTTGAGCAGAGAAAAATCCGTAATGGAACAAGACGAAACATTATCATCATCATTCTTCTCATACGATGTGAAAAGCTTCCACCGAATCAGCTTCGACCCAAGAGAGATAATCGAATCAATGGTGGATAAGAACATCGTGGGGCATGGTGGCTCCGGTACGGTGTACAAAATTGAACTAAGCAGTGGAGAAATGGTAGCCGTTAAAAGACTATGGAGTCGAAAGGGGAAAGATACGTCATCGGATCAAGAACAGTTGCATTTGGATAAAGAATTGAAAACAGAAGTTGAAACATTGGGAAGTATAAGGCACAAAAACATAGTGAAATTATACTGCTATTTCTCAAGTTTGGATTGTAGTCTTTTGGTTTATGAGTATATGCCAAATGGGAATTTATGGGATGCTTTACATAAGGGTTGGATTCATTTGGATTGGCCAACTAGACATCAAATTGCTTTAGGCATAGCTCAAGGATTGGCTTATCTTCATCATGATTTGTTGCCTTCTATAATTCATAGAGACATTAAAACAACTAATATTTTGTTGGATGTCAATTATCATCCTAAGGTTGCAGATTTCGGCATTGCTAAGGTTTTGCAAGCTAGAACCGGCAAGGATTCTACTACTACCGTCATCGCTGGGACTTACGGCTATCTCGCTCCTGAGTACGCATATTCATCGAAGGCCACAACAAAGTGTGACGTGTATAGCTTTGGGATCGTGTTGATGGAGTTAATAACGGGGAAGAAGCCAGTGGAGGCGGAGTTTGGAGAGAACAAGAACATCATATATTGGGTATCAAACAAAGTAGACACAAAGGAAGGAGCAATGGAAGTGTTAGACAAAAGGGTTTCATGTTCATTCAAAGATGAGATGATTGAAGTTCTAAGGATTGCAATTCGTTGTACATACAAGAATCCAGCCCTTAGACCCACCATGAAAGAAGTGGTTCAACTATTGATTGAAGCTGACCCTTGCAAATTCGATTCCCATAACAAATCCTCCAAACACACCACCACCAAAATCAACAACCCATTTGACCTATGA 2844 41.17 MALCFYFFLLQFTISLAFGTDQSLFFSLMQKGVVGNSLPSDWTGDSFCNFTGITCNEKGLVVGIDLSGRAVSGRFPADVCSYLPELRVLRLGRSGLRGTFPRGVTNCSVLEELDMNSLSLMGTLPDFSPLKTLRILDMSYNNFTGEFPLSVFSLTNLESLNFNEDNNFNTWQLPENVSGLTKLKSMVLTTCMLEGRIPATIGNMTALVDLELSGNFLTGKIPKEIGNLKNLRALELYYNSLVGEIPEELGNLTELVDLDMSVNKLTGKLPESICRLPKLEVLQLYNNSLTGEIPISISNSTTLTMLSLYDNYMTGQVPSNLGQFSPMVVLDLSENYFSGPLPTDVCGEGKLMYFLVLENKFSGQIPPSYGTCQSLLRFRVSSNNLEGPVPVGLLGLPHVSIIDFGNNNLSGEIPNSFVKARNLSELFMQSNKISGVLPPEISKATNLVKIDLSNNLLSGPIPSEIGNLRKLNLLLLQGNHLNSSIPTSLSDLKSLNVLDLSDNRLTGNIPESLCELLPNSINFSNNQLSGPIPLSLIKGGLVESFSGNPGLCVSVYLDSSDQKFPICSQYNNKKRLNSIWAIGISGFIILIGAALYLRRRLSREKSVMEQDETLSSSFFSYDVKSFHRISFDPREIIESMVDKNIVGHGGSGTVYKIELSSGEMVAVKRLWSRKGKDTSSDQEQLHLDKELKTEVETLGSIRHKNIVKLYCYFSSLDCSLLVYEYMPNGNLWDALHKGWIHLDWPTRHQIALGIAQGLAYLHHDLLPSIIHRDIKTTNILLDVNYHPKVADFGIAKVLQARTGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGIVLMELITGKKPVEAEFGENKNIIYWVSNKVDTKEGAMEVLDKRVSCSFKDEMIEVLRIAIRCTYKNPALRPTMKEVVQLLIEADPCKFDSHNKSSKHTTTKINNPFDL 947
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1506131 1510192 - MELO3C003486.2.1 Cme04g00205 324466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00205 947 ProSiteProfiles Leucine-rich repeat profile. 494 516 IPR001611 GO:0005515
Cme04g00205 947 SUPERFAMILY RNI-like 63 342 - -
Cme04g00205 947 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 10 938 - -
Cme04g00205 947 SUPERFAMILY L domain-like 245 558 - -
Cme04g00205 947 ProSitePatterns Serine/Threonine protein kinases active-site signature. 769 781 IPR008271 GO:0004672|GO:0006468
Cme04g00205 947 Gene3D Ribonuclease Inhibitor 299 562 IPR032675 -
Cme04g00205 947 SMART LRR_typ_2 228 252 IPR003591 -
Cme04g00205 947 SMART LRR_typ_2 492 516 IPR003591 -
Cme04g00205 947 SMART LRR_typ_2 276 300 IPR003591 -
Cme04g00205 947 SMART LRR_typ_2 130 154 IPR003591 -
Cme04g00205 947 SMART LRR_typ_2 83 107 IPR003591 -
Cme04g00205 947 SMART serkin_6 640 926 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g00205 947 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 10 938 - -
Cme04g00205 947 ProSiteProfiles Protein kinase domain profile. 640 920 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g00205 947 Gene3D Ribonuclease Inhibitor 20 298 IPR032675 -
Cme04g00205 947 Pfam Protein kinase domain 642 917 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g00205 947 Gene3D Transferase(Phosphotransferase) domain 1 726 943 - -
Cme04g00205 947 SUPERFAMILY Protein kinase-like (PK-like) 627 919 IPR011009 -
Cme04g00205 947 ProSitePatterns Protein kinases ATP-binding region signature. 646 668 IPR017441 GO:0005524
Cme04g00205 947 Gene3D Phosphorylase Kinase; domain 1 623 725 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme03g01772 Cme04g00205 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00205 Cme-Chr4:1506131 Cme01g00482 Cme-Chr1:3476964 0 dispersed
Cme04g00205 Cme-Chr4:1506131 Cme04g00206 Cme-Chr4:1518847 0 tandem
Cme01g00152 Cme-Chr1:1095995 Cme04g00205 Cme-Chr4:1506131 0 transposed
Cme03g01099 Cme-Chr3:20415691 Cme04g00205 Cme-Chr4:1506131 0 transposed
Cme08g01673 Cme-Chr8:18402399 Cme04g00205 Cme-Chr4:1506131 1.27E-128 transposed
Cme09g01026 Cme-Chr9:14391996 Cme04g00205 Cme-Chr4:1506131 5.28E-90 transposed
Cme09g01332 Cme-Chr9:18391767 Cme04g00205 Cme-Chr4:1506131 8.96E-84 transposed
Cme09g01516 Cme-Chr9:20310880 Cme04g00205 Cme-Chr4:1506131 1.41E-14 transposed
Cme11g02213 Cme-Chr11:29369857 Cme04g00205 Cme-Chr4:1506131 3.27E-88 transposed
Cme12g01094 Cme-Chr12:18866549 Cme04g00205 Cme-Chr4:1506131 1.60E-78 transposed
Cme03g01772 Cme-Chr3:26199097 Cme04g00205 Cme-Chr4:1506131 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64781 PF00069 Pkinase 2.50E-48 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00205 - - csv:101222864 1820.82