Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00206 TCTTCCTTTGTTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCATTTCCATTCACACAACACATTTCTGTTCTTCTTCTTCTTCTTCCGTGACTTTGACGACATGTCGTCTCTACATTTCCTCTCCTTTCTCACTCTCCTTTCCCTCTTCTTTCTCCCCGGAATCAAATCCACCGACGACCAACGTCAAATCCTCACCAAACTCAAATCCTCCCTCCATACTTCAAACTCCAATGTCTTTCATACCTGGACACTCCAAAACCCCATCTGCTCTTTCTCTGGAATTGTTTGTGATTCACGTGGTTTCGTTACACAAATTGACCTCTCTCAACAGGCTTTATCTGGGGTTGTTCCTTTTGATTCACTTTGTCAATTGCCAGCCTTGGAGAAGCTAGCTCTTCGCTCCAATTCCCTCTCCGGGGAAATCACCAACAGTTTGAACAATTGTGTGAAATTGAAGTATTTGGATCTCAGTGGCAATTTCTTCTCCAGCTCTTTCCCTAGCATACATTCTTTGAGTGGATTGGAGTTTCTGTATCTGAATTCAAGTGGGATTTCGGGGAAGTTTCCATGGAAATCAATAGGGAATTTGAGTGGTTTGGTTGTGTTAAGCGTTGGGGATAACGGTTTTGATAACACTACTTTTCCATTGGAGGTAACTAATTTGAAGAAGCTTAATTGGCTTTACATGTCAAATTGTAGTTTAACAGGGGAAATTCCAAGGTCTATTGGTAATCTCACGGAGCTTCATAATTTGGAAGTTTCGGATAATTATATAACAGGGACTATTCCGGTGGAGATTGGGAACTTGAACAAGCTATGGCAGTTGGAGTTATACAACAATCAATTAACGGGGATACTTCCAGTGGGGTTAAGAAATCTAACCGGGCTTAAGAATTTTGATGCTTCCTTGAATTATATTCATGGGGATTTGTCAGAGTTGAGGTATTTGACGAACTTGGTTTCTTTGCAAATGTTTGAAAATCAAATCTCCGGTCAAGTTCCGGTGGAGTTTGGTGAGTTTAAGTCGCTTGTGAATCTATCACTTTATAAGAACAAGCTTACTGGGCCTCTTCCTCAATCGATCGGTTCTTGGACGGAGTTTGATTACATTGATGTATCTGAAAATTTTTTGACGGGGTCGATTCCTCCTGATATGTGTAAGAAGGGGACGATGAAGAAGCTTTTAGTTCTTCAGAATAATTTTACCGGTGAAATTCCGGCGACTTACGGTAATTGCTCCACTTTGACCCGCTTTAGAGTTAGTCAGAACTTGCTCACCGGCGTTGTTCCGTCTGGAATTTGGGGATTACCGAACGTGAATATAATTGATCTCGACTCGAACAAGTTGGAAGGTTCGATCACTTCCGATATTGGAAAAGCTGTAGCTCTCTCGGAATTATACATCGGAAATAACCGATTCTCAGGTCGATTGCCATTAGAGATTTCGCAAGCAAAATCTCTCGCTTCGGTTGATTTGAGCAACAATCAATTCTCCGATGAGCTTCCGGCGACTATCGGTGACCTGAAGAATCTCGATAGCTTCGAATTGCAGGGGAACAAATTATCCGGTTCGATTCCAGAGTCGATCGGCTTGTGTAATTCTTTGAGTATCATAAATCTGGCGGAAAATTTCTTCTCTGGACAAATTCCTTCATCGCTCGGGCTTCTTCCAGTTTTAAACGCTTTGAATCTCTCCAATAACCACCTATCAGGTGAAATCCCCTCGACATTTTCGCATCTGAAATTGAGTTCTCTCGATCTTTCGAACAATCAATTAATCGGTCCAGTACCCGAAGCACTCTCGAACGGAGCTTACAAAGAAAGCTTCGCCGGAAACCCTGGCCTCTGCAGTGAGGCCGACAACTTTATACGGCGATGTTCACAAAATTCCGGCCCGTCGAAGGACGTCAGAGTACTCGTCATCGCTTTCGCCATCGGATTAATTCTTCTCAGCCTCACGCTATGGTGCTTCATAACCTTAAAAAAGAGCGCAAAAGATCGAGATCGATCGCTTAAAGAGGAATCGTGGGACCTAAAATCGTTCCACGTAATGACATTCACAGAAGAGGAGATTCTCGATTCCATTAAAGACGAGAATCTAATCGGAAAAGGAGGTTCCGGCAACGTTTACAAAGTAACAGTCGGAAACGGGAAAGAGTTCGCCGTGAAGCATATTTGGAACACAAATCCATACGAGGAGGAGAAGAAGAAGAAGAATTACCGTAGTTCATCGCCGATGCTTGTTAAACAGAGAACAAAGTCGTCGGAATTCGACTCAGAGGTGAAGACTCTAAGCTCAATCCGTCATGTGAACGTGGTGAAGCTTTACTGCAGCATAACGAGCGAGGTTTCAAGCTTGTTGGTGTATGAATACATGGCAAATGGAAGCTTATGGGACAGACTTCACACGTCGAGAAAAATGGAATTGGATTGGGAAACAAGATACGAAATCGCCGTCGGAGCCGCGAAGGGATTGGAATATCTTCATCATGGTTGTGACCGGCCGGTAATTCACCGGGATGTCAAATCTAGTAATATACTTTTGGATGAATTCTTGAAGCCCAGAATCGCTGATTTTGGACTTGCTAAGATTCTTCACACAACAACAACCTCTCACGACACTACCCATGTCATTGCCGGCACCCCGGGCTACATAGCCCCAGAATACGGATATACATACAAGGTGGATGAGAAGAGCGACGTGTATAGTTTTGGAGTGGTTTTGATGGAGTTAGTGAGCGGGAAAAAGGCAATAGAGGGAGAGTACGGAGAGAACAAAGAGATAGTACAATGGGTATCAAAGAATTTGAAGACGAGAGAAAGTGTATTGAGTATAGTTGATTCGAGGATACCAGATGCATACAAAGAGGATGCAATAAAGGTACTAAGAATTGCCATTTTGTGTACTGCAAGGCTTCCAAATTTAAGACCGACTATGAGAAGTGTGGTTCAAATGCTCGAAGAAGCTCAACCATGTCCTTTGCTTAGGGTTATTGTTACCAAGGATGTCGGGAGTAATATTGATAATGTTAAAAAGATCGGAGTTGGAGAGTTGAACGAGCTCTCTGATGTTGTATAA 3081 42.81 SSFVLFFFFFFFFFHFHSHNTFLFFFFFFRDFDDMSSLHFLSFLTLLSLFFLPGIKSTDDQRQILTKLKSSLHTSNSNVFHTWTLQNPICSFSGIVCDSRGFVTQIDLSQQALSGVVPFDSLCQLPALEKLALRSNSLSGEITNSLNNCVKLKYLDLSGNFFSSSFPSIHSLSGLEFLYLNSSGISGKFPWKSIGNLSGLVVLSVGDNGFDNTTFPLEVTNLKKLNWLYMSNCSLTGEIPRSIGNLTELHNLEVSDNYITGTIPVEIGNLNKLWQLELYNNQLTGILPVGLRNLTGLKNFDASLNYIHGDLSELRYLTNLVSLQMFENQISGQVPVEFGEFKSLVNLSLYKNKLTGPLPQSIGSWTEFDYIDVSENFLTGSIPPDMCKKGTMKKLLVLQNNFTGEIPATYGNCSTLTRFRVSQNLLTGVVPSGIWGLPNVNIIDLDSNKLEGSITSDIGKAVALSELYIGNNRFSGRLPLEISQAKSLASVDLSNNQFSDELPATIGDLKNLDSFELQGNKLSGSIPESIGLCNSLSIINLAENFFSGQIPSSLGLLPVLNALNLSNNHLSGEIPSTFSHLKLSSLDLSNNQLIGPVPEALSNGAYKESFAGNPGLCSEADNFIRRCSQNSGPSKDVRVLVIAFAIGLILLSLTLWCFITLKKSAKDRDRSLKEESWDLKSFHVMTFTEEEILDSIKDENLIGKGGSGNVYKVTVGNGKEFAVKHIWNTNPYEEEKKKKNYRSSSPMLVKQRTKSSEFDSEVKTLSSIRHVNVVKLYCSITSEVSSLLVYEYMANGSLWDRLHTSRKMELDWETRYEIAVGAAKGLEYLHHGCDRPVIHRDVKSSNILLDEFLKPRIADFGLAKILHTTTTSHDTTHVIAGTPGYIAPEYGYTYKVDEKSDVYSFGVVLMELVSGKKAIEGEYGENKEIVQWVSKNLKTRESVLSIVDSRIPDAYKEDAIKVLRIAILCTARLPNLRPTMRSVVQMLEEAQPCPLLRVIVTKDVGSNIDNVKKIGVGELNELSDVV 1026
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1518847 1522477 - MELO3C003487.2.1 Cme04g00206 324467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00206 1026 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 41 1000 - -
Cme04g00206 1026 SUPERFAMILY L domain-like 393 599 - -
Cme04g00206 1026 SMART LRR_typ_2 437 461 IPR003591 -
Cme04g00206 1026 SMART LRR_typ_2 125 149 IPR003591 -
Cme04g00206 1026 SMART LRR_typ_2 222 246 IPR003591 -
Cme04g00206 1026 SMART LRR_typ_2 557 580 IPR003591 -
Cme04g00206 1026 SMART LRR_typ_2 270 293 IPR003591 -
Cme04g00206 1026 SMART LRR_typ_2 509 533 IPR003591 -
Cme04g00206 1026 Gene3D Ribonuclease Inhibitor 389 502 IPR032675 -
Cme04g00206 1026 Gene3D Ribonuclease Inhibitor 171 388 IPR032675 -
Cme04g00206 1026 SUPERFAMILY L domain-like 195 451 - -
Cme04g00206 1026 Pfam Leucine Rich Repeat 151 170 IPR001611 GO:0005515
Cme04g00206 1026 Pfam Leucine Rich Repeat 562 581 IPR001611 GO:0005515
Cme04g00206 1026 Pfam Leucine Rich Repeat 221 246 IPR001611 GO:0005515
Cme04g00206 1026 Gene3D Phosphorylase Kinase; domain 1 679 792 - -
Cme04g00206 1026 SMART serkin_6 696 987 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g00206 1026 SUPERFAMILY L domain-like 47 265 - -
Cme04g00206 1026 ProSitePatterns Protein kinases ATP-binding region signature. 702 724 IPR017441 GO:0005524
Cme04g00206 1026 Gene3D Ribonuclease Inhibitor 503 628 IPR032675 -
Cme04g00206 1026 Gene3D Transferase(Phosphotransferase) domain 1 793 994 - -
Cme04g00206 1026 Pfam Leucine rich repeat N-terminal domain 59 98 IPR013210 -
Cme04g00206 1026 PANTHER RECEPTOR-LIKE PROTEIN KINASE 7 41 1000 - -
Cme04g00206 1026 ProSitePatterns Serine/Threonine protein kinases active-site signature. 837 849 IPR008271 GO:0004672|GO:0006468
Cme04g00206 1026 ProSiteProfiles Protein kinase domain profile. 696 996 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g00206 1026 SUPERFAMILY Protein kinase-like (PK-like) 682 988 IPR011009 -
Cme04g00206 1026 Gene3D Ribonuclease Inhibitor 59 170 IPR032675 -
Cme04g00206 1026 Pfam Protein kinase domain 698 985 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00152 Cme-Chr1:1095995 Cme04g00206 Cme-Chr4:1518847 0 dispersed
Cme03g01099 Cme-Chr3:20415691 Cme04g00206 Cme-Chr4:1518847 0 dispersed
Cme03g01772 Cme-Chr3:26199097 Cme04g00206 Cme-Chr4:1518847 0 dispersed
Cme04g00206 Cme-Chr4:1518847 Cme12g01317 Cme-Chr12:21222820 0 dispersed
Cme04g00205 Cme-Chr4:1506131 Cme04g00206 Cme-Chr4:1518847 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64782 PF00069 Pkinase 3.40E-44 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00206 - - csv:101223100 1770.75