Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00208 ATGGCAGGAGTTCTCAGAGAAAGAGCACTCTCTCTCCTCGCCGCCGCTAACAACCACGGCGATTTAACGGTGAAGATTTCATCTTTGAATCAGGTTAAGGATATTATACTGGCCATCGAGCCTTCTTTCGCAGCAGAGCTCTACTCCTACTTGGTTGAGCTTCAGTCCTCCCCCGAGAGCTTACTACGTAAATTGTTAATTGAGGTGATTGAAGACATTGGATTAAGAGCCATGGAACATTCTCCTCTGTTAATGTCGGTTTTATTGGCATCTTTAAAGGATGGAGAATCAATCGTTGCGGGACAATCAATTATTAGTGGCCAAAAATTATTTTGTGGTACTTTAAGAGAGATGGCATTACAGTGGCATCGGCGAGGTAAAGTTGAAAGATGGCTGGAAGAACTGTGGATGAGAATGTTGAAATTTAAAGATGAGGTTTTAGCAATTGCTTTAGAGCCTGGATCTGTTGGGAAGAGGTTGCTGGCTCTGAAATTTTTGGAAACGTATGTTCTACTTTTTACATCTGACACAAATGATCCACAAAAAGCTATTTCAGAAGGAAATAGGGATGTTTTTAACATTTCATGGCTAGCTGGTGGGTTTCCTATTTTGGATCCAGTTGGGCTAATGTCGGAAGCTAATAGGATGCTTGGCATTCTGTTGAATTTGTTGCAGACCAGTTCTGTTCCTGGTACATATACAGTAACAGTTGTCAGTAGTTTAGCAACTATAGCAAGGAAAAGACCAATTCATTATGGCAACATTCTCTCGGCACTGCTGGATTTTGTTCCAAGTTTTGAGATGACAAAAGGGCGTCATGCTGCCAGCATTCAGTATTCTATAAGATCTGCCCTTTTGGGATTCCTAAGGTGCATGCATCCAGCTTTTGTAGAGTCAAGAGATAGATTGCTAAAGGCTTTAAGAGGTATAAATGCTGGAGATGCTGCGGATCAAGTGATCAGGCAAGTGGACAAAATGGTGAAAGCTGCTGATCGAGCTGCACGTGATGCTTGGCTGGGCAAGGATGACCAATCATCAAATCAGCTAAATGCATCAGCTGATCTGACAAGAAAAAGATCTAGGGTTCTGGATGATGAAGAACTTTCCAATGGCCGTGAGGTTTCCAAGCAATTTCGGTTTGGTCCAGACGTTCACCCAATTTCCACAGCTCAAAAAGATGGTTCTCTTCAGAATGCCGTCTCTAATGGAACATCCCATGATGTTTCTAAGTTAGATGCTGAATTGACTCCTGCAGAGCAGATGATTGCAATGATTGGCGCCTTACTTGCTGAAGGGGAGCGAGGTGCAGAGTCGCTTGGAATTCTGATTTCAAATATTCATCCTGACTTGTTGGCTGATATTGTCATAACTAACATGAGGAACTTGCCCAAAGCCTCACCTCCTTTGACTTGGCCTGGAGACTTGCCTGTAACTCGTCAAGGAAGTAGTCATGTGCAGGTTCTGGCACCATCAGCCCCATTGAGTTCGGTGCAAACTTCAGTTGCTCCTGCACAAATTCCTTCTTCTTTGGCTATGTCAGCTGGTTCAACTTTTGCTGAGGCTACTGTCAATAGTCTCCCTGTTGATTCTAAACGTGATCCCAGAAGGGATCCCCGCCGCCTTGATCCTCGTCGTGGAGGAGTATCTTCTGCTTCTAGTGTGGAAGAGGCAAGTTCAAATACATCTGATGTTGATGGCTCCATATCTTTGGGAAAATCTGCTTCGGTTCCTGTTTCTGTGACGATTGAGAATTCCTCAGTATCTCTTGTATCAAAAACGAAAGTTGAAGAAAAAATTATAGAGTCTCCATTAGTGTTTGGAACAGAGCAATCAACCCCCAAATCAAGATCTCCTGATAGAGCTGAGAAAATTGACACTATATTAGAGATTCATGCCCCTCTGGATCCCACGCCTACAGCTGTTGGAAAAGCTGATGATGGTTTAGTTGCAGTTAGTTTGTTTGATGACTTAGCAACTAAGGGGGACGATGCATCGTCTTGTGTGGAATACAATCAGTTTTCTCCATCAGTTACAAGTGCAGCTGCATCTGAAGATACCTGTGAGGAGTTGCCTTCGCTTCCCCCATACGTTGACTTGACTTCAGAACAGCAAATAACTGTAAGAAATTTGGCAGCTGAAAAGATATTTGATTCATGCAAGAATTTTAATGGGGCAGACTGCCATCAGATACGCTTGGCAATAATTGCTCGATTGGTTGCTCAGGTTGATGCTGATGATGATATTGTTCGAATGTTGGAAAAGCAAGTTGCTATTGACTACCAACAACAAAAGGGGCATGAGCTAGCATTGCATGTCTTATATCATCTGCATTCACTTAATATTCTGGATTCGGCGGAAAGTTCTTCTTTTGCTGTGTACGAGAAGTTTCTTCTAGTTGTGGCTAAATCGTTACTAGATGCTTTTCCAGCTTCGGACAAATCTTTTAGTAGACTTCTTGGTGAAGTTCCAGTTTTGCCAGACTCTACATTGGAACTACTACATAAACTTTGCTCTTGTGATATTACCGACAACGGGGGGAAGGATACTCCTGATATTGAGCGTGTCACGCAAGGCCTTGGCACTGTTTGGAATTTGATTGTGAAGCGTCCATATAGTCGGCAAGCTTGCTTAGATATTGCTCTGAAGTGTGCTATGCATTCGGAAGTTAAGGTTCGAGCAACAGCTATTAGATTGGTGGCAAACAAACTCTACCGCTTAAGTTACATTTCAGATAGGATTGAGCAACATGCAACGAACATGTTCCTGTCTGCGGTAGACGACGTAGATCAGACAGATGTAGAGCCTTCACCATGTGTATCAATTGAACAAAGAACTGGAGGAGAGGGTGAGAGTTTGGAAACGTCTGTCTGTGGTTCTCAAGTTTCAGATCCGGGAATTTCAGAAAATGATTCACTGAGGAGTTCACAACCTACAGTTCATGGCAGTTCAACCTTGTCACTTTCAGAAGCTGAAAGACATATTTCTCTTCTTTTTGCTCTATGCGTGAAGAATCCTTGTTTGCTTCGGTTTGTGTTCGATGCTTATGGACGGGCTCCCAGAGCAGTGAAAGAGGCTGTGCACGAACATATTCCTAATCTTATTACGGCCCTAGGGTCATCTGATTCTGAATTGCTTAGAATAATATCAGATCCACCTCCAGGAAGTGAACATCTCTTAGCATTGGTGCTACAGGTACTAACTCAAGAGACAGCACCTTCGTCTGATCTGATTGACACAGTCAAACATTTATACGAAACTAAGCTGAAGGATGTGACAATTCTCATTCCAATGTTGTCCTCGCTTTCCAAAAATGAGGTTTTACCTGTTTTTCCTCGGCTGGTTGATCTTCCATTGGAGAAGTTTCAGAGAGCGTTGGCTTACATATTACAGGGTTCAGCACATACACGTCCAGCTTTAACACCTGTTGAAGTTCTGATTGCCATCCACAACATAATTCCTGAAAAGGATGGCCTTCCACTAAAGAAGATAACGGATGCTTGTTCGGCTTGTTTTGAGCAACGTACAGTTTTCACTCAGCAGGTTTTAGCAAAAGCCTTGAGCCAGATGGTTGAACAAACTCCACTCCCTCTTCTCTTCATGAGAACTGTGATTCAGGCAATCGATGCTTTCCCTACGCTGGTCGATTTTGTCATGGAGATACTTTCCAAACTTGTAAACAGACAGGTCTGGAGGATGCCAAAATTATGGTTTGGTTTTTTGAAATGTGCATTTCAAACACAGCCTCATTCCTTCCGAGTACTATTACAGTTGCCGCCGCCACAACTTGAAAATGCTTTGAATAAATATGTTAACCTTAAAGGTCCTCTTGCTGCTTATGCCAGCCAGCCCAGCACAAAATCTACTCTCTCTAGGTACATTTCCTCGATCATGTACATTATATTATCTGTTTTCTGCTAG 3918 42.83 MAGVLRERALSLLAAANNHGDLTVKISSLNQVKDIILAIEPSFAAELYSYLVELQSSPESLLRKLLIEVIEDIGLRAMEHSPLLMSVLLASLKDGESIVAGQSIISGQKLFCGTLREMALQWHRRGKVERWLEELWMRMLKFKDEVLAIALEPGSVGKRLLALKFLETYVLLFTSDTNDPQKAISEGNRDVFNISWLAGGFPILDPVGLMSEANRMLGILLNLLQTSSVPGTYTVTVVSSLATIARKRPIHYGNILSALLDFVPSFEMTKGRHAASIQYSIRSALLGFLRCMHPAFVESRDRLLKALRGINAGDAADQVIRQVDKMVKAADRAARDAWLGKDDQSSNQLNASADLTRKRSRVLDDEELSNGREVSKQFRFGPDVHPISTAQKDGSLQNAVSNGTSHDVSKLDAELTPAEQMIAMIGALLAEGERGAESLGILISNIHPDLLADIVITNMRNLPKASPPLTWPGDLPVTRQGSSHVQVLAPSAPLSSVQTSVAPAQIPSSLAMSAGSTFAEATVNSLPVDSKRDPRRDPRRLDPRRGGVSSASSVEEASSNTSDVDGSISLGKSASVPVSVTIENSSVSLVSKTKVEEKIIESPLVFGTEQSTPKSRSPDRAEKIDTILEIHAPLDPTPTAVGKADDGLVAVSLFDDLATKGDDASSCVEYNQFSPSVTSAAASEDTCEELPSLPPYVDLTSEQQITVRNLAAEKIFDSCKNFNGADCHQIRLAIIARLVAQVDADDDIVRMLEKQVAIDYQQQKGHELALHVLYHLHSLNILDSAESSSFAVYEKFLLVVAKSLLDAFPASDKSFSRLLGEVPVLPDSTLELLHKLCSCDITDNGGKDTPDIERVTQGLGTVWNLIVKRPYSRQACLDIALKCAMHSEVKVRATAIRLVANKLYRLSYISDRIEQHATNMFLSAVDDVDQTDVEPSPCVSIEQRTGGEGESLETSVCGSQVSDPGISENDSLRSSQPTVHGSSTLSLSEAERHISLLFALCVKNPCLLRFVFDAYGRAPRAVKEAVHEHIPNLITALGSSDSELLRIISDPPPGSEHLLALVLQVLTQETAPSSDLIDTVKHLYETKLKDVTILIPMLSSLSKNEVLPVFPRLVDLPLEKFQRALAYILQGSAHTRPALTPVEVLIAIHNIIPEKDGLPLKKITDACSACFEQRTVFTQQVLAKALSQMVEQTPLPLLFMRTVIQAIDAFPTLVDFVMEILSKLVNRQVWRMPKLWFGFLKCAFQTQPHSFRVLLQLPPPQLENALNKYVNLKGPLAAYASQPSTKSTLSRYISSIMYIILSVFC 1305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1542821 1566193 - MELO3C003489.2.1 Cme04g00208 324469

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00208 1305 Gene3D - 2 338 IPR011989 -
Cme04g00208 1305 SUPERFAMILY ARM repeat 15 1267 IPR016024 -
Cme04g00208 1305 Pfam Symplekin/PTA1 N-terminal 99 316 IPR032460 -
Cme04g00208 1305 Pfam Symplekin tight junction protein C terminal 1090 1268 IPR022075 -
Cme04g00208 1305 MobiDBLite consensus disorder prediction 947 981 - -
Cme04g00208 1305 MobiDBLite consensus disorder prediction 941 981 - -
Cme04g00208 1305 MobiDBLite consensus disorder prediction 524 570 - -
Cme04g00208 1305 MobiDBLite consensus disorder prediction 551 570 - -
Cme04g00208 1305 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN-RELATED 1 1297 - -
Cme04g00208 1305 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN-RELATED 1 1297 - -
Cme04g00208 1305 MobiDBLite consensus disorder prediction 529 544 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00208 K06100 SYMPK; symplekin - csv:101202828 2383.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00208 Cme-Chr4:1542821 Cme08g02208 Cme-Chr8:28127582 1.00E-64 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g565 Blo01g01788 . . . Bpe02g00153 . . Bma01g02573 . . Cma01g01458 . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00180 . . . Bda11g00813 . . . . . . Cmo01g01510 . . . . . . . Bhi09g02541 Tan01g3888 . . Hepe01g2195 Mch11g0740 . . . . . . . . . . . Cme04g00208
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004558 1 4 1 1 1 0 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 2 1 1 1 1 3 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00208 Cme_Chr04 FPKM 5.393898 5.352483 6.21735 5.20139 7.908188 9.715842 8.476369 12.371299 11.14572 11.133308