Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00212 ATGGAGCTGAACGAACACTATCTGTTAGAAGAAGTTTTGGGTTTGAGAAGATCAGAAATGAATTGGGAATTAGCAATTGCAACAGAAATGAACGGGTGGAATTTTGATTGTTGTTCTGATGCTTTGCCAATGGATCAGCAGCACAACGATGATCTTAACTATCTTCTGAATGGGGAAGATCAGTACTTGAGCACGGAGGCGGCGATGGCGGCGGCGGCGGGGGGGAGCACGGGGGATTCGATGTCGTATAACACGATGGTGGAGACGCCGGGAAGTTTTGAGGTTTATAATATTAGGAGTATGGAAGAGGAGGAACTTGGGATTTTGGAGGATGAGATTCATAATCTTGAAGTTCAAGCTAACAATGATTCTTATTATTGTAAAGTTGAGCCTATCGTCGTTGAATCTCCTGAAAAGATGCTACCTATTTTCAACACGGGTGGTGGCACGTGCGACGAGCAAAAAATCGTGAATTACTCGTGTGGTGGTAAGAAACTTCAGGGGCAGCCGTCGAAGAATCTCATGGCGGAGAGACGGCGGAGGAAGCGACTTAACGATCGCCTCTCTATGCTTAGATCCATTGTCCCCAAAATCAGCAAGATGGATAGAACTGCGATTCTTGCGGATGCAATTGAGTACGTGAAGGAACTGATGGAGAAAATCAAAATTTTGGAAAAGGAAATTAACATTCCAAACGAGTTGGGGATTTTGAGATCACATAATATTGTGAAACCAAATAATGAATATTTGGTGAGAAATTCAGCTAAGTTTAATGTGGAAAGAAGAGAAGATGAAACAAAGATAGAGATATGTTGTGCAGCAAAGCCAGGGTTGTTATTGTCAACAGTAAACACTCTTGAAGCAATGGGACTTGACATTCAACATTGTGTTATTAGCTGTTTCAATGACTTTGCTATTCAAGCTTCTTGTTCTCAGTATTCAAAATTCAATCGTTGTATTTAA 963 41.54 MELNEHYLLEEVLGLRRSEMNWELAIATEMNGWNFDCCSDALPMDQQHNDDLNYLLNGEDQYLSTEAAMAAAAGGSTGDSMSYNTMVETPGSFEVYNIRSMEEEELGILEDEIHNLEVQANNDSYYCKVEPIVVESPEKMLPIFNTGGGTCDEQKIVNYSCGGKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIEYVKELMEKIKILEKEINIPNELGILRSHNIVKPNNEYLVRNSAKFNVERREDETKIEICCAAKPGLLLSTVNTLEAMGLDIQHCVISCFNDFAIQASCSQYSKFNRCI 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1591415 1593492 - MELO3C003492.2.1 Cme04g00212 324473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00212 320 CDD ACT_UUR-ACR-like 266 307 - -
Cme04g00212 320 SMART finulus 174 223 IPR011598 GO:0046983
Cme04g00212 320 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 320 - -
Cme04g00212 320 Pfam Helix-loop-helix DNA-binding domain 174 217 IPR011598 GO:0046983
Cme04g00212 320 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 168 217 IPR011598 GO:0046983
Cme04g00212 320 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 172 231 IPR036638 GO:0046983
Cme04g00212 320 Gene3D - 164 232 IPR036638 GO:0046983
Cme04g00212 320 Coils Coil 207 227 - -
Cme04g00212 320 Coils Coil 99 119 - -
Cme04g00212 320 PANTHER - 2 320 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme03g01779 Cme04g00212 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00212 Cme-Chr4:1591415 Cme12g01562 Cme-Chr12:23013361 6.71E-22 dispersed
Cme03g01779 Cme-Chr3:26288771 Cme04g00212 Cme-Chr4:1591415 5.08E-81 wgd
Cme04g00212 Cme-Chr4:1591415 Cme08g00704 Cme-Chr8:4701993 3.71E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41140 PF00010 HLH 7.30E-10 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00212 - - csv:101222621 489.96