Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00223 ATGGCTGTTGCATCTGAAGAGACCACAAGCATATGCAATCACTGCGGAAGAGATATTCCGTCATCAAATATCGATCTGCATTCTGTTCATTGCGTGAGGAATCTTGAAAAATGTAAAATATGCGGCGATATGGTTCCTAAAAGACATGCGGAAGAACATTTTTTGAACACACATGCGCCAGTTTCCTGTTCGCTGTGTAGCGAGACCATGGAGCGGGACATTTTAGCAATTCATAAAGGTGAGAATTGCCCCCAAAGGATTGTCACTTGCGAGTTCTGTGAGTTCCCATTGCCAGCAATAGATTTGGCTGAACATCAGGAAGTTTGTGGTAACCGGACTGAACTTTGTCCTCTTTGTCGTTGTTATATAAGACTACGAGAACGATATAACCACGAAAACAATTGCAAGGGTATTGTACCTGCTGATAACATTGCAGAATCTTCCAGGGATGTGGGGGCAGCACCAGAAAGAGATCATCAAGCTAGAGATCGAGGTGCTCAAAGAAGACAGCCACAGGAGTTTTCTACTCGTCGTCTTATATTCACTATTGCAATAACTGGTATTGCCGTTCTATTAGGATCCCTATTTTTCCAGAGGAAGAGCGAGAGCAACATCGTACACTGA 624 43.43 MAVASEETTSICNHCGRDIPSSNIDLHSVHCVRNLEKCKICGDMVPKRHAEEHFLNTHAPVSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCPLCRCYIRLRERYNHENNCKGIVPADNIAESSRDVGAAPERDHQARDRGAQRRQPQEFSTRRLIFTIAITGIAVLLGSLFFQRKSESNIVH 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1698444 1701758 + MELO3C003503.2.1 Cme04g00223 324484

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00223 207 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 113 IPR013083 -
Cme04g00223 207 MobiDBLite consensus disorder prediction 151 171 - -
Cme04g00223 207 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 57 IPR013083 -
Cme04g00223 207 PANTHER TRAF-TYPE ZINC FINGER PROTEIN-RELATED 1 205 - -
Cme04g00223 207 MobiDBLite consensus disorder prediction 147 171 - -
Cme04g00223 207 PANTHER XIAP-ASSOCIATED FACTOR 1-LIKE 1 205 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00223 - - - csv:101203543 425.246
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g546 . . . . Bpe02g00147 . . . . . Cma01g01467 Cma09g00598 . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00195 . . . Bda11g00808 . . . . . . Cmo01g01523 . . . . . . . Bhi09g02524 Tan01g3870 . . Hepe01g2183 Mch11g0723 . . . . . . . . . . . Cme04g00223
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003824 1 2 1 2 2 0 2 1 1 1 1 1 1 1 1 2 1 3 2 1 1 1 1 1 1 0 1 7 2 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00223 Cme_Chr04 FPKM 27.797787 30.313351 14.951762 15.255466 23.433863 24.379253 24.063883 14.581903 14.174073 14.194047