Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00225 ATGTCATCCAAAGCCGTCCGGTTGCAGATACGAGATCATCATGTGGTGGTGGATAATGGTATATTGCAACTAACTTTATCAAAGCCTGATGGAATTATCACTGGCATACGATATAATGGTGTTGACAATCTACTTGAAGTTCTTAATCCTGAATCTAATAGAGGGTACTGGGACCTTGTTTGGAATTCTCCAGGAAGCAAGGGAATATTTGACGTGATTAAAGGGTCAAGGTTTAGTGTTATAGTGGAAAATGAGGAACAGGTTGAGCTTTCTTTTGTGAGAATGTGGGATCCCTCCCTTGAGGGCAAGTTTGTTCCTTTGAATATAGACAAAAGGTTCATAGTACTACGTGGTTCCTCTGGATTTTACTCTTATGCTATTTATGAGCACTTGAAGGATTGGCCTGATTTCGATATTGGTGAAACCAGGATCACCTTTAAACTTAGAAAAGACAAGTTTCAGTACATGGCTGTAGCTGACAATAGGCAGAGAGTCATGCCCTTGCCTGATGATCGGTTATCTGGAAGATGCCAAACTTTGGCCTATCCTGAAGCTGTCTTGCTTACTGATCCCAAGAACTCTGCTCTCAAGGGTGAGGTGGATGACAAATACCAATACTCGTGTGAAAACAACAACTTAAAGGTTCATGGATGGATAAGCACCAACCCACCCACCGGGTTTTGGCAGATTACACCCAGTGATGAATTTCGGTCAGGTGGGCCTCTTAAGCAAAGTCTAACATCACACGTGGGACCTACAACCCTTGCTATATTTCTTAGTGCTCATTATGCGGGACAAGATTTGGTGCCAAAATTTAGAGCTGGTGAGCCATGGAAGAAAGTTTTTGGCCCTGTTTTTCTATATCTTAATTCAACCTCAGTTGGAGATGACCCATTTTGGTTATGGGAGGATGCTAAAATACAGATGATGGCAGAAGTCGAAAGTTGGCCATATAGTTTCCCTGCATCAGAGGATTTCTCAAAAAAAGATCAACGGGGTATGGTTAGTGGTAGGCTACTGGTTTTTGACAGGTATGTGGATCAAGACTATCTTCCAGGCAGTGGAGCCTTCGTCGGATTGTCTGCACCAGGAGAAGTGGGATCATGGCAGAGAGAATGCAAAGGATATCAATTCTGGACTAGAGCAGATGATGGTGGTTATTTTACCATCAACCACGTACTCACCGGTGACTATAATCTATATGCATGGGTTCCTGGCTTCATTGGAGATTATCGCTGTGACGCCCTCGTCAATGTAAGCCAAGGATCTTGCATTGAAATGGGTGATCTTGTATATGAACCTCCTAGAGATGGGCCTACGCTTTGGGAAATAGGCATTCCCGATCGCTCTGCGTCCGAGTTCTATGTTCCTGATCCTAATCCAATATATATTAATAAACTCTTTGTCAACCATCCTGACAGGTTTCGACAGTACGGGTTGTGGGACAGATACGCTGAATTGTACCCAGACGAGGATTTAGTATACACAGTTGGCACAAGTGACTATAGAAAAGATTGGTTCTTTGCTCATGTCCCTAGGAAGACAAACAGTAATTCACATGAAGGAACTACTTGGCAAATCAAATTTCAACTCGATAGAGTGGATCGCAAGAGTATGTATATGCTACGGGTTGCAATTGCTTCTGCTACTCTTGCTGAATTGCAGGTCCGGGTAAATGATCCGAGATCGAAGCGACCTTTGTTTACGAGTGGGTTGATAGGGAGAGACAATTCAATTGCAAGACATGGAATTCATGGAATTTATTGGGTTTATAGCGTGAGCGTAGCAGGGTGTCATCTTGTTGAAGGAGAAAACACAATCTTCTTGACTCAGCCACGCTGCACCAGCCCTTTTCAGGGTATCATGTATGATTATATCCGTCTCGAAGGTCCTCCAACAAAGTGA 1905 43.25 MSSKAVRLQIRDHHVVVDNGILQLTLSKPDGIITGIRYNGVDNLLEVLNPESNRGYWDLVWNSPGSKGIFDVIKGSRFSVIVENEEQVELSFVRMWDPSLEGKFVPLNIDKRFIVLRGSSGFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRQRVMPLPDDRLSGRCQTLAYPEAVLLTDPKNSALKGEVDDKYQYSCENNNLKVHGWISTNPPTGFWQITPSDEFRSGGPLKQSLTSHVGPTTLAIFLSAHYAGQDLVPKFRAGEPWKKVFGPVFLYLNSTSVGDDPFWLWEDAKIQMMAEVESWPYSFPASEDFSKKDQRGMVSGRLLVFDRYVDQDYLPGSGAFVGLSAPGEVGSWQRECKGYQFWTRADDGGYFTINHVLTGDYNLYAWVPGFIGDYRCDALVNVSQGSCIEMGDLVYEPPRDGPTLWEIGIPDRSASEFYVPDPNPIYINKLFVNHPDRFRQYGLWDRYAELYPDEDLVYTVGTSDYRKDWFFAHVPRKTNSNSHEGTTWQIKFQLDRVDRKSMYMLRVAIASATLAELQVRVNDPRSKRPLFTSGLIGRDNSIARHGIHGIYWVYSVSVAGCHLVEGENTIFLTQPRCTSPFQGIMYDYIRLEGPPTK 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1705493 1711780 + MELO3C003505.2.1 Cme04g00225 324486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00225 634 Gene3D - 5 304 IPR014718 GO:0030246
Cme04g00225 634 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 633 - -
Cme04g00225 634 SUPERFAMILY Starch-binding domain-like 346 425 IPR013784 GO:0030246
Cme04g00225 634 CDD RGL4_M 331 430 IPR029413 -
Cme04g00225 634 Gene3D - 438 629 - -
Cme04g00225 634 CDD RGL4_N 14 293 - -
Cme04g00225 634 SUPERFAMILY Galactose-binding domain-like 437 629 IPR008979 -
Cme04g00225 634 Pfam Polysaccharide lyase family 4, domain II 354 425 IPR029413 -
Cme04g00225 634 Pfam Rhamnogalacturonate lyase family 9 200 IPR010325 -
Cme04g00225 634 CDD RGL4_C 442 629 - -
Cme04g00225 634 SUPERFAMILY Galactose mutarotase-like 12 296 IPR011013 GO:0003824|GO:0005975|GO:0030246
Cme04g00225 634 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 633 - -
Cme04g00225 634 Gene3D - 328 425 - -
Cme04g00225 634 Pfam Polysaccharide lyase family 4, domain III 440 628 IPR029411 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00225 Cme-Chr4:1705493 Cme04g00227 Cme-Chr4:1722724 0 dispersed
Cme04g00225 Cme-Chr4:1705493 Cme04g00226 Cme-Chr4:1714504 0 tandem
Cme08g00410 Cme-Chr8:2518594 Cme04g00225 Cme-Chr4:1705493 7.47E-180 transposed
Cme03g01821 Cme-Chr3:26590816 Cme04g00225 Cme-Chr4:1705493 0 wgd
Cme04g00225 Cme-Chr4:1705493 Cme08g00713 Cme-Chr8:4750323 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00225 K18195 - csv:101203947 1282.32