Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00226 ATGAAAAACAGTAATTCTTTTTCCTCAATTTTATTTTGCCTTTTCTCTTCTTTTCTCTTCCCTTTCATCTCTTCAACAACACCCTCATGGCCGCCGATGAACTCCCGACACGCCGTCTCGACGGCCGCCACGCCACCCCCGCCGCTGCAACTGCACATTATCGACCAACATGTTGTGATGGACAACGGAATAATTAAAGTCAACTTGTCAAATCCTAAGGGTATGGTCAATGGAATAGAGTATGGAGGGATCGAAAACTTGCTTTCTACTGACAACGATGAAGATGATAGAGGATATTGGGACATCGTTTGGAATTTGGAAGGAAGTTCAGGAACCAAGGGGATTTTAGATCGATTGGAAACAACAGACTTCAAGGTAATTGTCGAAAATGAAGAACAAATAGAACTCTCATTCAGTAGAACTTACAACAATTCATCCACGGGTGGCAAGCTCATTCCCTTAAACATCGACAAAAGGTTCGTGATGCTTCGTAATTCATCAGGATTCTATACGTACGCCATTTACGAACACTTGAAAGAATGGCCTGCGTTTAACCTCGACAACACTAGAATCGCATTCAAGCCACGAAAAGACAAGTTTCATTACATGGCTGTAGCAGATAAGAGACAAAGACTCATGCCTTTGCCTGACGATCGAAAGCCACCGCGAGGGCAAGCCTTAGCTTATCCGGAAGCCGTCCTTCTTGTCGATCCCATAGAACCACAGTTCAAGGGAGAGGTGGATGACAAGTACCAATACGGCTGCGAAAGCAAAGACAGTCGGGTTCACGGGTGGATATCCACCGACCCGCCCATTGGCCTTTGGCAAATCTCACCCACCGAGGAATTCCGCTCCGGTGGACCCCTCAAACAATTTCTCACCTCCCACGTCGGTCCCACAACCCTCACCGTTTTTCATAGCACTCATTACGCAGGAGAGGATATGGTTATAAAGTTCGGAGATAATGAGCCATGGAAGAAGGTTTTTGGTCCTATCTTTATCCATCTCAATTCCTTGCCTGAAGGAGAGGATCCGCTTAGACTTTGGCAAAATGCTAAAGAACAGATGATGGCTGAAGTTCAAAGTTGGCCTTACGGTTTCATTGCTTCTGAGGATTTTCCCAAATCCGATCAACGAGGCACCGTCAGCGGCAGATTCCTAATCCGGGAGAGATATGCGAGTGATGAATCTGTGCCCGCAAGTGGTGCTTATGTGGGCTTGGCACTTCCTGGAGAACTTGGGTCTTGGCAAAATGAAAGCAAGGGGTACCAATTTTGGACTAGAGCAGATCAGAATGGAAGTTTCTCTTTGAATAATGTTCGCAGTGGAAATTATAGTCTTTATGGATGGGTCCCCAATTTTATTGGCAATTACCAATACAGTGCTTTCATCGTCGTAACCCCAGGCAGTGATATCAATGTGGGTGAACTTGTTTTTGAGCCACCAAGAGATGGTCCTACATTGTGGGAAATAGGCATTCCTGACCGTACCGCTGCAGAATTCTACATACCCGATCCTAATCCAAAGTATATCAATAAACTCTATGTTAATCATTCAGATCGGTTTAGGCAGTATGGATTATGGGAAAGATATGCGGAGTTATATCCTAACGAGGATCTAGTTTACACAGTTGGCCTTAGTGACTACAAAAAAGATTGGTTCTTTGCACAAGTTACCAGGAAAATAGGGGACAACAAATATGCCGGAACTACCTGGAAAATCAAGTTCCAACTTGACAGTCCAGATACTCATGGAACATATAGGCTGCGTCTTGCATTGGCCACTGCACATGCTGCAGAGTTACAAGTCCGGCTGAATGATGCACAAGCACTTCCTCCATTATTTACAACTGGATTGATTGGAAAGGACAATACTGTAGCTAGACATGGAATCCATGGTCTCTATCGACTGTACACGGTTGACATTCCGGGCGGTGAGCTTGTGGTGGGCAACAATACAATTCTTCTTACGCAAGCAAGTAGCAACAGCCCCTTTGTGGGGATCATGTATGATTATATTCGTCTAGAAGGACCCTTAACATCCAAAATGTAA 2052 44.83 MKNSNSFSSILFCLFSSFLFPFISSTTPSWPPMNSRHAVSTAATPPPPLQLHIIDQHVVMDNGIIKVNLSNPKGMVNGIEYGGIENLLSTDNDEDDRGYWDIVWNLEGSSGTKGILDRLETTDFKVIVENEEQIELSFSRTYNNSSTGGKLIPLNIDKRFVMLRNSSGFYTYAIYEHLKEWPAFNLDNTRIAFKPRKDKFHYMAVADKRQRLMPLPDDRKPPRGQALAYPEAVLLVDPIEPQFKGEVDDKYQYGCESKDSRVHGWISTDPPIGLWQISPTEEFRSGGPLKQFLTSHVGPTTLTVFHSTHYAGEDMVIKFGDNEPWKKVFGPIFIHLNSLPEGEDPLRLWQNAKEQMMAEVQSWPYGFIASEDFPKSDQRGTVSGRFLIRERYASDESVPASGAYVGLALPGELGSWQNESKGYQFWTRADQNGSFSLNNVRSGNYSLYGWVPNFIGNYQYSAFIVVTPGSDINVGELVFEPPRDGPTLWEIGIPDRTAAEFYIPDPNPKYINKLYVNHSDRFRQYGLWERYAELYPNEDLVYTVGLSDYKKDWFFAQVTRKIGDNKYAGTTWKIKFQLDSPDTHGTYRLRLALATAHAAELQVRLNDAQALPPLFTTGLIGKDNTVARHGIHGLYRLYTVDIPGGELVVGNNTILLTQASSNSPFVGIMYDYIRLEGPLTSKM 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1714504 1721741 + MELO3C003506.2.1 Cme04g00226 324487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00226 683 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 35 682 - -
Cme04g00226 683 SUPERFAMILY Galactose mutarotase-like 58 338 IPR011013 GO:0003824|GO:0005975|GO:0030246
Cme04g00226 683 Gene3D - 485 676 - -
Cme04g00226 683 PANTHER RHAMNOGALACTURONATE LYASE B-RELATED 35 682 - -
Cme04g00226 683 SUPERFAMILY Galactose-binding domain-like 484 676 IPR008979 -
Cme04g00226 683 Pfam Polysaccharide lyase family 4, domain III 487 675 IPR029411 -
Cme04g00226 683 Gene3D - 120 330 IPR014718 GO:0030246
Cme04g00226 683 CDD RGL4_N 57 338 - -
Cme04g00226 683 CDD RGL4_C 489 676 - -
Cme04g00226 683 Pfam Polysaccharide lyase family 4, domain II 401 473 IPR029413 -
Cme04g00226 683 Gene3D - 375 475 - -
Cme04g00226 683 SUPERFAMILY Starch-binding domain-like 376 475 IPR013784 GO:0030246
Cme04g00226 683 Pfam Rhamnogalacturonate lyase family 47 247 IPR010325 -
Cme04g00226 683 CDD RGL4_M 378 477 IPR029413 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01821 Cme-Chr3:26590816 Cme04g00226 Cme-Chr4:1714504 0 dispersed
Cme04g00226 Cme-Chr4:1714504 Cme08g00713 Cme-Chr8:4750323 0 dispersed
Cme04g00225 Cme-Chr4:1705493 Cme04g00226 Cme-Chr4:1714504 0 tandem
Cme04g00226 Cme-Chr4:1714504 Cme04g00227 Cme-Chr4:1722724 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00226 K18195 - csv:101203789 1242.64