Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00227 ATGGCAAATGAGATACTCCAATTGGATATTCAGGATCATCACGTAGTTATGGACAATGGTATATTGCAAGTGACACTGTCTAAGCCAGATGGAAATGTAACTGGGATAAAATACAACAGCATTGACAATGTTTTAGAAGTTGATGATAAGGAAACTCATAGAGGGTACTGGGACCTTGTGTGGAACTCTGGGACTTCAGGAACGACAGGAACATTCGATGAGATGAGAGGAAAAGAATTTGAAGTGATGGTGCAAAATGAGGAACAGATAGAGCTTTCATTTAAAAGGAATTATTCATTTAAGGACAAGGCTGTTCCCTTAAACATAGACAAAAGGTTCATAATGCTTCGTAACTCCTCTGGATTCTACTCATATGCCATCTATGAGCACATGAGGGAATGGCCACCATTCAACCTTCCTCAAACGAGGATTGTGTTTAAGCTAAGAAAAGACAAGTTTCACTATATGGCCATAGCAGATGACAGACAGAGATTCATGCCACTTCCCGAGGATAGACTACGTCACAGAGGAAAACCTTTGGATTTTCCAGAGGCTGTGTTGCTGGTCAATCCTAAAGAACCTGAGTTCAAGGGAGAGGTAGATGATAAGTACCAATATTCTTGTGAAAATAAAGATCTTAAAGTGCATGGATGGATATCCATGGATCCTCCGGTGGGTTTCTGGCAAATCACTCCAAGCAGTGAGTTCAGATCAGGTGGACCCCTCAAACAGAATCTAACATCTCATGTCGGCCCATATGCTCTTGCTATGTTTCTTAGTGCTCACTATTCAGGAGAGGACTTGGTGTTGAAGCTCAGTCCTGATGAGCCTTGGAAGAAAGTTTTTGGCCCTGTATTTTTCTATCTAAATTCTGTTTCTGATGGAGGTGATCCACTTTCTTTGTGGGAAGATGCTAAAACTCAGATGTCGATAGAAGTTCAAAGTTGGCCATATTCTTTTCCAGCTTCCGAGGATTTCCCCCCACCAAACCAACGTGGTAGATTGACTGGAAAATTATTTGTCCTTGATAGATATATTAACGAGGAGAAAATGCCGGCAACTGATGCGTATGTGGGACTTGCAGCACCAGGAGAAGCAGGATCATGGCAGACCGAAAACAAGGGCTACCAGTTTTGGACCAAAACAGATGCAGATGGCTCGTTTAGCATTGAACATGTACGCATTGGCGACTACAATCTTTATGCTTGGGTTCCTGGCTTCATTGGTGACTACCGTTATGATGTTCTCATTAATGTGTCTCCAGGTAGTGATATGGATGTAGGCGATCTTGTTTACGAGCCGCCTAGGAATGGGCCCACATTATGGGAAATAGGCATTCCTGATCGCTCTGCTGCTGAATTCTATATTCCTGATCCTGATCCAAAGTACATTAACAAATTGTATGTCAATCATCCGGACAGATTCAGACAGTATGGACTGTGGGAAAGATATGCTGAGTTATATCCTGATGCAGACTTAGTATATTCAGTTGGTGTCAGTGATTACACAAAAGATTGGTTCTTTGCTCATGTTAATCGAAAGAGAAATGATGGATCCCATTTAGCAACCACATGGGAAATCAAGTTTAGAGTTGATAATATCATAGATAAGAGCGGCACCTATACATTGCGAGTGGCTCTGGCCACTGCCAATGTTGCTGAATTACAGGTAAATAATCCAGAAGCAAAGCCAAGTTTATTTACAACAGGAATGATTGGACATGACAATGCAATTGCTAGGCATGGAATTCATGGACTCTATCGACTCTATAGTGTTGACATATTAGGATCTCTACTTGTGGAAGGAGAAAACACCATCTTCCTTTCACAAATTATAAACAGTTCATCTTTCAATGGCGTCATGTATGATTATATCCGCCTCGAAGGCCCCCCATCCGATTCGATATCTCTACAAAATTCATAG 1923 41.55 MANEILQLDIQDHHVVMDNGILQVTLSKPDGNVTGIKYNSIDNVLEVDDKETHRGYWDLVWNSGTSGTTGTFDEMRGKEFEVMVQNEEQIELSFKRNYSFKDKAVPLNIDKRFIMLRNSSGFYSYAIYEHMREWPPFNLPQTRIVFKLRKDKFHYMAIADDRQRFMPLPEDRLRHRGKPLDFPEAVLLVNPKEPEFKGEVDDKYQYSCENKDLKVHGWISMDPPVGFWQITPSSEFRSGGPLKQNLTSHVGPYALAMFLSAHYSGEDLVLKLSPDEPWKKVFGPVFFYLNSVSDGGDPLSLWEDAKTQMSIEVQSWPYSFPASEDFPPPNQRGRLTGKLFVLDRYINEEKMPATDAYVGLAAPGEAGSWQTENKGYQFWTKTDADGSFSIEHVRIGDYNLYAWVPGFIGDYRYDVLINVSPGSDMDVGDLVYEPPRNGPTLWEIGIPDRSAAEFYIPDPDPKYINKLYVNHPDRFRQYGLWERYAELYPDADLVYSVGVSDYTKDWFFAHVNRKRNDGSHLATTWEIKFRVDNIIDKSGTYTLRVALATANVAELQVNNPEAKPSLFTTGMIGHDNAIARHGIHGLYRLYSVDILGSLLVEGENTIFLSQIINSSSFNGVMYDYIRLEGPPSDSISLQNS 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1722724 1729031 + MELO3C003507.2.1 Cme04g00227 324488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00227 640 Pfam Polysaccharide lyase family 4, domain III 440 627 IPR029411 -
Cme04g00227 640 SUPERFAMILY Galactose-binding domain-like 437 628 IPR008979 -
Cme04g00227 640 CDD RGL4_C 442 628 - -
Cme04g00227 640 CDD RGL4_M 331 430 IPR029413 -
Cme04g00227 640 Gene3D - 438 628 - -
Cme04g00227 640 PANTHER RHAMNOGALACTURONATE LYASE B-RELATED 1 635 - -
Cme04g00227 640 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 635 - -
Cme04g00227 640 Pfam Rhamnogalacturonate lyase family 7 200 IPR010325 -
Cme04g00227 640 Gene3D - 328 427 - -
Cme04g00227 640 CDD RGL4_N 14 301 - -
Cme04g00227 640 SUPERFAMILY Galactose mutarotase-like 12 291 IPR011013 GO:0003824|GO:0005975|GO:0030246
Cme04g00227 640 SUPERFAMILY Starch-binding domain-like 328 427 IPR013784 GO:0030246
Cme04g00227 640 Pfam Polysaccharide lyase family 4, domain II 355 425 IPR029413 -
Cme04g00227 640 Gene3D - 7 272 IPR014718 GO:0030246
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00225 Cme-Chr4:1705493 Cme04g00227 Cme-Chr4:1722724 0 dispersed
Cme04g00227 Cme-Chr4:1722724 Cme08g00713 Cme-Chr8:4750323 0 dispersed
Cme04g00226 Cme-Chr4:1714504 Cme04g00227 Cme-Chr4:1722724 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00227 K18195 - csv:101204193 1291.17